| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_0989 |
|---|
| Symbol | |
|---|
| ID | 4311493 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 1080543 |
|---|
| End bp | 1081211 |
|---|
| Gene Length | 669 bp |
|---|
| Protein Length | 222 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638148793 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_772882 |
|---|
| Protein GI | 115351043 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTCGCA TGGCCCGACA GCAATTTGAC CTGATCGTCT TCGACTGGGA CGGCACGCTG
ATGGATTCGA CTGCGCACAT CGCGCACAGC ATCCAGGCCG CGTGCCGCGA TCTCGGCCTG
CCCACGCCGT CGGACGAGGC GTCCCGCTAC GTGATCGGCC TTGGGCTGCG CGATGCGCTG
CGCATTACTG CACCGACCCT CGATCCGTCC GACTATCCGC GGCTGGCCGA GCGTTACCGC
TTTCACTACC TGCTGGACGA CCAGCGCATC GAGTTGTTCG CCGGCGTGCG CGAACTGCTC
GCGGAATTGC GCGATACGGG TTACCTCCTG GCGGTCGCGA CCGGCAAGGG CCGGGTCGGG
CTGAATCGCG TGCTGGACCA GTCGAAGCTG ACGAGCCTGT TCGATGCGAC GCGCTGCGCG
GACGAAACGT TCTCGAAGCC GCACCCGGCG ATGCTGCACG AACTGTCCCG CGAATTGGGG
CAGGATCTGG CGCGTACCGT GATGATCGGC GACACCACGC ACGACCTGCA GATGGCGGCG
AGCGCGGGGG CGGCCGGCGT CGGCGTCTCC TACGGCGCGC ATACGGCCGA GGCGCTGGCC
GCGCTGACGC CGCGCTTCGT CGCGCCGGAC GTCGTCGCGC TGGCGGCATG GCTGCGGGAG
CACGCATGA
|
|---|
| Protein sequence | MTRMARQQFD LIVFDWDGTL MDSTAHIAHS IQAACRDLGL PTPSDEASRY VIGLGLRDAL
RITAPTLDPS DYPRLAERYR FHYLLDDQRI ELFAGVRELL AELRDTGYLL AVATGKGRVG
LNRVLDQSKL TSLFDATRCA DETFSKPHPA MLHELSRELG QDLARTVMIG DTTHDLQMAA
SAGAAGVGVS YGAHTAEALA ALTPRFVAPD VVALAAWLRE HA
|
|---|
| |