Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_0863 |
Symbol | |
ID | 4310868 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008390 |
Strand | - |
Start bp | 948642 |
End bp | 949784 |
Gene Length | 1143 bp |
Protein Length | 380 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 638148664 |
Product | porin |
Protein accession | YP_772756 |
Protein GI | 115350917 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00000949722 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAGA CCCTGATCGT CGCCGCATTG GCGGGCGTGG CTGCCAGCGC CGCCCATGCG CAAAGCAGCG TCACGTTGTA CGGCCTGATC GATGCAGGCA TCACCTACAC GAACAACCAG CACGGTCACA GCGCGTGGCA GGAAACGAGC GGCTCGATCA ACGGCAGTCG CTGGGGCCTG CGCGGCACCG AGGATCTCGG CGGCGGCCTG AAGGCGATCT TCACGCTGGA AAACGGCTTC GGCATCAACA ACGGCTCACT GAAGCAGAAC GGCCGCGAGT TCGGTCGACA GGCGTTCGTC GGGCTCGCGC ACAACAGCTT CGGCTCGCTC ACGCTCGGCC GCCAGTACGA CAGCGTCGTC GACTACCTCG GCCCGCTGTC GCTAACCGGC ACCCAGTACG GCGGCACGCA GTTCGCGCAT CCGTTCGACA ACGACAACCT GAACAACTCG TTCCGGATCA ACAACTCGGT CAAGTACCAG AGCGCGAACT ACGGCGGCCT GAAGTTCGGC GGGCTGTACG GCTTTTCGAA TTCCACCGGT TTCGCGAACA ATCGCGCGTA CAGCGTCGGC GCGTCGTACA GCTACATGGG TTTCAACGTC GCGGCCGCGT ACCTGCAGCT CAACAACAAC ATCAACGCGC TGGCGCTCGC GGCGAGCGAC CCCGGCGCGG TGGCCGGCGA CTGGACCTTC GCGGCCAGCC GGCAGCGCAC CTGGGGCGCA GGCCTGAACT ACACGTTCGG TCCCGCGACG GCCGGCTTCG TGTTCACGCA GACGCGCCTG ACCAATTCGG CCGGGATCAG CGCCGGGCAG TCCGGCGTGT CGACCGGCAT CCCGCTCACC GGCGGCACAC GCTTCAACAA TTACGAGGTG AATGGCCGTT ACGCGCTGAC GCCGGCGTTC TCGCTCGCCG GCTCGTACAC GTACACCGAC AGCCGTCTCG ACGGCCAGAC GCCGAGCTGG CATCAGTTCA ACCTGCAGGC CGACTATGCG TTGTCGAAGC GCACGGACCT GTACCTGCAG AGCGAATATC AGCGGGTCAA TACCAATGGG CTGGCGATCG GCGCGAACAT CAACGGACTC GGCGCCGCGT CGTCGACGAA CAAGCAGATC GCCGTCACGG CCGGCATGCG CCACCGCTTC TGA
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Protein sequence | MKKTLIVAAL AGVAASAAHA QSSVTLYGLI DAGITYTNNQ HGHSAWQETS GSINGSRWGL RGTEDLGGGL KAIFTLENGF GINNGSLKQN GREFGRQAFV GLAHNSFGSL TLGRQYDSVV DYLGPLSLTG TQYGGTQFAH PFDNDNLNNS FRINNSVKYQ SANYGGLKFG GLYGFSNSTG FANNRAYSVG ASYSYMGFNV AAAYLQLNNN INALALAASD PGAVAGDWTF AASRQRTWGA GLNYTFGPAT AGFVFTQTRL TNSAGISAGQ SGVSTGIPLT GGTRFNNYEV NGRYALTPAF SLAGSYTYTD SRLDGQTPSW HQFNLQADYA LSKRTDLYLQ SEYQRVNTNG LAIGANINGL GAASSTNKQI AVTAGMRHRF
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