| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_0717 |
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| Symbol | |
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| ID | 4309005 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008390 |
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| Strand | - |
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| Start bp | 797467 |
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| End bp | 798939 |
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| Gene Length | 1473 bp |
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| Protein Length | 490 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 638148512 |
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| Product | TRAP-type uncharacterized transport system periplasmic component-like protein |
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| Protein accession | YP_772610 |
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| Protein GI | 115350771 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.482708 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCCAG CCAGCCCTCG CCCGCCCCGC CGCATCCTCG CCCGCTTCGT CGCGGTGTCG
TGGCGCGACC TCGCGCTGTC GATCGGCCCC ACCGTGCTGC TCGCGGGCAC GGCGGTCTGG
CTCGCAGTCA AGCTGATCCA GCCGGCGCCG CCGTCCACGC TCGTGATTTC GTCCGGGCCG
CCCGGCAGCA CCTACTGGAA CGCCGCGCAG AAATACAAGG CGATCCTCGC GAAGAACGGC
GTCACGCTCG ACGTCGAGTC GTCCGAAGGA TCGGCGCAGA ACCTCGAGCG GCTGTCGAAC
CCGAACGCGC CGGTCGACGT CGGCTTCGTG CAGAGCGGCA TCGGCCCGAA GGAGCGCGAC
GAGCACCTGG TCTCGCTCGG CAGCATCGGC TACGTGCCGC TCGCGATCAT GTACCGCGGC
CCGATCGTCG CCCGCCTGTC CGACTTCAAG GGCAAGCGGC TCGCGCTCGG CGCGGAGGGC
AGCGGCGCGC GCGAACTGAG CCTCGCGCTG CTGAAGATGA ACGGCATCGT GCCGGGCGGC
GCGACCGAGC TGCTGCCGAC CGCCGGCGAG GACGCCGCGA CCGCGCTGCT CGACGGCAAG
ATCGACGCCG CGTTCCTGTC CGGCGACTCG ACCCAGATCC CGGTGATGGC GAAGCTGTTC
CGCGCGCCGG GCGTGCACGT GTACTCGTTC ACGCAGGCCG AGGCGTACGC GCGGCGCTTT
CCGTACCTGA CCGCGATCAC GCTGCCGATG GGCGTCTACG ATCTCGGCCG CAACCTGCCG
CCCGCCGACA TCCACACCGT CGCGCCAACG ATCGAGCTGG TCGCGCGCGA CACGCTGCAT
CCCGCGCTGT CCGACCTGCT GATCGAGGCC GCGCGCGAGG TGCACGGCCA CGCGACGATC
CTGCAGCACG CGGGCGAATT CCCGTCGGCC GTCACGCGCG GCTTCCCGCT GTCGGACGAC
GCGGCGCGCT ACTACAAGTC GGGCAAGACC TTCCTGTACC GGCGGCTGCC GTTCTGGGTC
GCGAGTCTGG TCGACCGGAT GCTCGTCGTG CTGGTGCCGC TGATCGTCGT GCTGATTCCC
GGGTTGCGGC TGGTGCCGTC GCTGTACGGC TGGCGCGTGC GTTCGCGCAT CTACCGCTGG
TACGGCGCGC TGATCGCGCT CGAACGCCGC GCGCTCGGCG AGCACACGGC CGAGGAGCGC
GTCCAGCTGC TCGACGAGCT CGACGACATT GAAGAAGCCG TGAACCGGAT GAAGATGCCG
CTCGCGTACG CGGGGCAGTT CTACGTGCTG CGCGAGCACA TCGGCTTCGT GCGCGAGCGC
CTCACCGCGC ACGAGCACGA CGCCGCGTCG GGCGCATCCG GCACGTCAGG CACGTCGGGC
ACGCCCGGCG CCGGCCCGCC CACGACGGCG CGAACCGCGG AGGCGTCGCC GCCGGCCGGC
GCGCCCCCCC GGGCGACTCC CGGTTCCGCG TAA
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| Protein sequence | MKPASPRPPR RILARFVAVS WRDLALSIGP TVLLAGTAVW LAVKLIQPAP PSTLVISSGP
PGSTYWNAAQ KYKAILAKNG VTLDVESSEG SAQNLERLSN PNAPVDVGFV QSGIGPKERD
EHLVSLGSIG YVPLAIMYRG PIVARLSDFK GKRLALGAEG SGARELSLAL LKMNGIVPGG
ATELLPTAGE DAATALLDGK IDAAFLSGDS TQIPVMAKLF RAPGVHVYSF TQAEAYARRF
PYLTAITLPM GVYDLGRNLP PADIHTVAPT IELVARDTLH PALSDLLIEA AREVHGHATI
LQHAGEFPSA VTRGFPLSDD AARYYKSGKT FLYRRLPFWV ASLVDRMLVV LVPLIVVLIP
GLRLVPSLYG WRVRSRIYRW YGALIALERR ALGEHTAEER VQLLDELDDI EEAVNRMKMP
LAYAGQFYVL REHIGFVRER LTAHEHDAAS GASGTSGTSG TPGAGPPTTA RTAEASPPAG
APPRATPGSA
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