| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_0677 |
|---|
| Symbol | tolB |
|---|
| ID | 4308554 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | - |
|---|
| Start bp | 757356 |
|---|
| End bp | 758651 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638148472 |
|---|
| Product | translocation protein TolB |
|---|
| Protein accession | YP_772570 |
|---|
| Protein GI | 115350731 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
|---|
| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.814489 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGATTGA TGACGAAACT AGGTTTCAGG GCACTCGTGG CCTCGTGTCT GATTGCGGCC
GGCGCCGCCG CTAACGCGCA GGTCAACGTG TTGATCACCG GCGTCGGTTC GACCCAGTTC
CCCATCGCCA CCGCGAACTT CGCGAACGAG GCGGGCCTGC CGCAGCAGGT CACGTCGATC
GTCCGCGCGG ATCTCGCGCG CAGCGGCAAA TTCACCAACA TCGATGCGGG CAGCACGCCC
GTGCCCGAGA CCGCCTCGGT GGATCTCGGC GCATGGAAGG CCAAGGGCGC GAACGCGTTC
GTCGCCGGCA GCGTGAACCG CGAGGCGAAC GGCCAGTACA AGGTGAACTT CATCCTGTAC
GACACCGTGA AGCAGCAAAG CCTCGGCGGC CTGTCGCTGA CGGCCACCGA CACGACGCTG
CGCACGGCCG GCCACAAGAT CGCCGACTAC ATCTACCAGA AACTGCTCGG CGTGCGCGGC
GTGTTCGCCA CCCGCCTGTC GTATGTGATC AAGACGGGCA ACCGCTACCA ATTGCAGATC
TCGGATTCGG ACGGCCAGAA CGCGCGCATC GCGCTGTCGA GCACCGAGCC GATCATCTCG
CCGGCGTGGT CGCCGAGCGG CACGAAGGTC GCGTACGTGT CGTTCGAGCG CAAGAAGCCA
ATCGTCTACA TCCACGACCT GCCGACCGGC CGCCGCTACA TGGTCTCCGA CCAGAAGGGC
AACAACAGCG CGCCGGCGTG GTCGCCGGAC AGCAACACGC TCGCCGTCGC GCTGTCGCTG
ACGGGCAATA CGCAAATCTA TACGGTCAAT GCGAACGGCG GCGGCCTGCG CCGTCTCACG
CAGAGCAGCT CGATCGACAC CGAGCCGTAC TACTCGCCGG ACGGCCGCTG GATCTACTTC
ACGAGCGATC GCGGCGGTGC GCCGCAGATC TACCGGATGC CCGCGCAGGG CGAAAGCGCC
GGCGCGGCGC AACGCGTGAC CTTCACCGGC AGCTACAATA CGAGCCCGCG CATCAGCCCG
GACGGCAAGC TGCTCGCTTA CATCTCCCGC ACGGGTGGGG GCTTCAAGCT GTACGTTCAG
GATCTGCAAA CCGGCGCGGC GAACGCGATC ACGAATACCA ATCGTGACGA ATCGCCGAGC
TTCGCGGCAA ACGGCCAGTA CCTTCTCTAC GCTACCCAGT CGGGTGGTCG CAACGTGCTG
GCAGCTGTGC CCTCCGACGG CAGCGCGCCG CCTCAGATCC TGTCCGTCCA GGGCGGCTCC
GTTCGCGAGC CGTCGTGGGG GCCCTTCATG CAATGA
|
|---|
| Protein sequence | MRLMTKLGFR ALVASCLIAA GAAANAQVNV LITGVGSTQF PIATANFANE AGLPQQVTSI
VRADLARSGK FTNIDAGSTP VPETASVDLG AWKAKGANAF VAGSVNREAN GQYKVNFILY
DTVKQQSLGG LSLTATDTTL RTAGHKIADY IYQKLLGVRG VFATRLSYVI KTGNRYQLQI
SDSDGQNARI ALSSTEPIIS PAWSPSGTKV AYVSFERKKP IVYIHDLPTG RRYMVSDQKG
NNSAPAWSPD SNTLAVALSL TGNTQIYTVN ANGGGLRRLT QSSSIDTEPY YSPDGRWIYF
TSDRGGAPQI YRMPAQGESA GAAQRVTFTG SYNTSPRISP DGKLLAYISR TGGGFKLYVQ
DLQTGAANAI TNTNRDESPS FAANGQYLLY ATQSGGRNVL AAVPSDGSAP PQILSVQGGS
VREPSWGPFM Q
|
|---|
| |