Gene Bamb_0551 details

Gene Information

• Locus tag: Bamb_0551
• Symbol: holA
• ID: 4308692
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia ambifaria AMMD
• Kingdom: Bacteria
• Replicon accession: NC_008390
• Strand: +
• Start bp: 617458
• End bp: 618552
• Gene Length: 1095 bp
• Protein Length: 364 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 638148345
• Product: DNA polymerase III subunit delta
• Protein accession: YP_772444
• Protein GI: 115350605
• COG category: [L] Replication, recombination and repair
• COG ID: [COG1466] DNA polymerase III, delta subunit
• TIGRFAM ID: [TIGR01128] DNA polymerase III, delta subunit

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.0556298
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAATTGC GACTTGATGC GCTGGAGCCG CACCTCGCGA AGGGGATGGC CGGGCTCTAC 
ACCGTCTACG GCGACGAGCC GCTGCTCGCG CAGGAAGCGT GCGACCGCAT TCGTGCGGCC 
GCGCGCGCGG CCGGCTTCAC CGAGCGTTCG GTGCATACGG TCGAGCGCGG CTTCGACTGG 
AGCGTGCTGC TCGGCGCGAC GCAGGCGATG TCGCTGTTCG GCGAGCGCCA GCTGATCGAG 
CTGCGCATTC CGTCGGGCAA GCCCGGCAAG GAAGGCGCCG ATGCGCTGAA GACGCTCGCG 
GCGACTCCCA ACCCCGACGC GCTGATGCTC GTCACGTTGC CGCGCCTCGA CGCGGCAACG 
CAGAAATCCG CATGGTTTAC CGCGCTGCAG AACGGCGGCG TCGCGCTGAA GATCGATCCG 
GTCGAGCGCG CGCAGCTGCC GAACTGGATC GGCCAGCGTC TGTCGATGCA GGGCCAGCGC 
GTCGCGCCCG GCGACGACGG GCGGCGCGCG CTGCAGTTCA TCGCGGAGCG CGTCGAGGGC 
AACCTGCTCG CCGCGCATCA GGAAATCCAG AAACTCGGGC TGCTCTATCC GCAGGGCGTG 
CTGTCGTTCG AGCAGGTGCA CGACGCGGTG CTGAATGTCG CGCGCTACGA CGTGTTCAAG 
CTGAACGAGG CGATGCTCGC GGGTGACGCC GCGCGGCTCG CGCGGATGAT CGACGGGCTG 
AAGGGCGAGG GCGAGGCGAT CGTGCTCGTG ATGTGGGCCG TCGTCGAGGA ATTGCGCACG 
CTGCTGCGGA TCAAGCGTGG CACGACGGCC GGCAAGCCGC TCGCCACGCT GCTGCGCGAG 
AACCGCGTGT GGGGCCCGCG CGAGCGGCTG ATCGGCCCCG CGCTGAACCG CGTGTCGGAA 
CCCGTGCTCG AAAAGGCGCT CGCGTTCGCC GCGAAACTCG ACCGGCAGGT GAAGGGGCTG 
TCGGCGATCA CGCCGGGCCG CCGCTCGCAG GACGATCCGC CGCCCGACCC GTGGGACGGC 
CTGTTCCAGC TCGCGATGAC GGTGGCGGGC GCCCGCGGCG AGCGACCGCC GCCCGCGGGT 
CGCGTGCGGC GTTAA 

 

Protein sequence

MQLRLDALEP HLAKGMAGLY TVYGDEPLLA QEACDRIRAA ARAAGFTERS VHTVERGFDW 
SVLLGATQAM SLFGERQLIE LRIPSGKPGK EGADALKTLA ATPNPDALML VTLPRLDAAT 
QKSAWFTALQ NGGVALKIDP VERAQLPNWI GQRLSMQGQR VAPGDDGRRA LQFIAERVEG 
NLLAAHQEIQ KLGLLYPQGV LSFEQVHDAV LNVARYDVFK LNEAMLAGDA ARLARMIDGL 
KGEGEAIVLV MWAVVEELRT LLRIKRGTTA GKPLATLLRE NRVWGPRERL IGPALNRVSE 
PVLEKALAFA AKLDRQVKGL SAITPGRRSQ DDPPPDPWDG LFQLAMTVAG ARGERPPPAG 
RVRR