Gene Bamb_0540 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_0540 
Symbol 
ID4309275 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008390 
Strand- 
Start bp606442 
End bp607161 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content69% 
IMG OID638148334 
ProductGntR domain-containing protein 
Protein accessionYP_772433 
Protein GI115350594 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0230635 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAACG TTCCGCACAC CGTGACCGAC GCCGCCATCG CGACGATCCG CGACCGGATC 
GAGGCAGGCG TCTATCCGGT CGGCAGCCTG CTGCCGGCCC AGCGCCAGCT CTCCGAGGAG 
CTGGAGATCA GCCGTGCGTC GCTGCGCGAG GCGCTCTCCA CGCTCGAGGC GCTCGGGATG 
CTGCGCATCC GCGCCGGCAA GGGCGTCTAT GTCGAAAGCG CGCAGGCGAG CGCCGCCCAT 
CCGTGGCAGT TCGCCGAGCA GTCGTCGCCG CCCGACACGT ACCAGATGCG CTATGCGCTC 
GAAGGATTCG CCGCGCGCAT GGCCGCGCAC GTCGTCAGCG ACGACGACAT CGCCTGGTTC 
GAGGACAACC TCGCCGACCT CCACGTCGCG CTCACCGACA GCGAGCTGGA CGAAGCGTCG 
CGGCTCGACT TCGACTTCCA CATGCGGATC ATCCATCTCG CCGGCAACGC GGCGATCGAG 
TCGGTGTTGC GCAGCAGCGC GGACATCATG AAGGAAAGCC AGCGCATGCC GTTCTACCGG 
CGCGAGCTGC TGCTGTCGAC GTGGCACGAG CACCGCGCGA TCCTCGACGC GCTGATCGCC 
CGCGATGCGG CCGCGGCCGG CCTCGCGATC GAGACGCACA TCGCGAACGC CGCGCAGCGC 
GCGGGCATCT TCTTCCCGAC GCCGTCCGCC GGCACCGTCG CGGCTCTTCC CGTGAAATAA
 
Protein sequence
MKNVPHTVTD AAIATIRDRI EAGVYPVGSL LPAQRQLSEE LEISRASLRE ALSTLEALGM 
LRIRAGKGVY VESAQASAAH PWQFAEQSSP PDTYQMRYAL EGFAARMAAH VVSDDDIAWF 
EDNLADLHVA LTDSELDEAS RLDFDFHMRI IHLAGNAAIE SVLRSSADIM KESQRMPFYR 
RELLLSTWHE HRAILDALIA RDAAAAGLAI ETHIANAAQR AGIFFPTPSA GTVAALPVK