Gene Bamb_0539 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_0539 
Symbol 
ID4309274 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008390 
Strand+ 
Start bp605353 
End bp606363 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content64% 
IMG OID638148333 
Productglyceraldehyde-3-phosphate dehydrogenase, type I 
Protein accessionYP_772432 
Protein GI115350593 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.188515 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGATCC GCGTCGCAAT CAACGGCTAC GGCCGCATCG GCCGCAACAC GCTGCGCGCG 
TTTTATGAAA ACGGCAAGAA GCACGATCTC GAGATCGTCG CGATCAACGA CCTGGGCGAC 
GCGAAGACCA ACGCGCACCT GACCCAGTAC GACACCGCGC ACGGCAAGTT CCCGGGCGAC 
GTGTCGGTCG ACGGCGACTA CCTCGTCGTG AACGGCGACA AGATCCGCGT GCTGGCCAAC 
CGCAATCCGG CAGAACTGCC GTGGGGCGAG CTCGGCGTCG ACGTCGTGAT GGAATGCACG 
GGCTTCTTCA CGACGAAGGA AAAGGCGAGC GCGCACCTGA AGGGCGGCGC GAAGAAGGTG 
ATCATCTCGG CGCCGGGCGG CAAGGACGTC GACGCAACGA TCGTCTACGG CGTGAACCAC 
GACGTGCTGA AGGCCGAGCA CACCGTCATC TCGAACGCAT CGTGCACGAC GAACTGCCTC 
GCGCCGCTCG TCAAGCCGCT GAACGACCGC ATCGGCCTCG AAACCGGCCT GATGACGACG 
ATCCACGCTT ACACGAACGA CCAGGTGCTG ACGGACGTCT ATCACGAAGA CCTGCGTCGC 
GCGCGTTCGG CCACCCACAG CCAGATCCCG ACGAAGACGG GCGCTGCGTC GGCCGTCGGC 
CTCGTGCTGC CGGAACTGAA CGGCAAGCTC GACGGCTACG CGATCCGCGT CCCGACGATC 
AACGTGTCGA TCGTCGACCT GTCGTTCATC GCGAAGCGTG ACACGACGGT CGAGGAAGTC 
AACGCGATCA TGAAGGAAGC ATCGGAAGGC GGGCTGAAGG GCATCCTCGG CTACAACGAC 
GCGCCGCTGG TGTCGATCGA CTTCAACCAC AACCCGGCTT CGTCGACGTT CGACGCGACG 
CTGACCAAGG TGTCGGGCCG CCTCGTCAAG GTGTCGAGCT GGTACGACAA CGAGTGGGGT 
TTCTCGAACC GCATGCTGGA TACGGCAGTC GCGTTCGCGA ACGCGAAGTA A
 
Protein sequence
MTIRVAINGY GRIGRNTLRA FYENGKKHDL EIVAINDLGD AKTNAHLTQY DTAHGKFPGD 
VSVDGDYLVV NGDKIRVLAN RNPAELPWGE LGVDVVMECT GFFTTKEKAS AHLKGGAKKV 
IISAPGGKDV DATIVYGVNH DVLKAEHTVI SNASCTTNCL APLVKPLNDR IGLETGLMTT 
IHAYTNDQVL TDVYHEDLRR ARSATHSQIP TKTGAASAVG LVLPELNGKL DGYAIRVPTI 
NVSIVDLSFI AKRDTTVEEV NAIMKEASEG GLKGILGYND APLVSIDFNH NPASSTFDAT 
LTKVSGRLVK VSSWYDNEWG FSNRMLDTAV AFANAK