| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_0490 |
|---|
| Symbol | |
|---|
| ID | 4308629 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 553467 |
|---|
| End bp | 555203 |
|---|
| Gene Length | 1737 bp |
|---|
| Protein Length | 578 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638148284 |
|---|
| Product | prolyl-tRNA synthetase |
|---|
| Protein accession | YP_772383 |
|---|
| Protein GI | 115350544 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0442] Prolyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00409] prolyl-tRNA synthetase, family II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0401161 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCTT CCCGTTTCTT TATCGGCACC CTCAAAGAAG CACCGGCCGA CGCAGAGATC
GTCAGCCACA AGCTGATGGT GCGCGCCGGC ATGATCCGTC GTGTCGCCGG CGGCATCTAT
AACTACCTGC CGGTCGGCCT GCGTTCGATT CGCAAGGTCG AAGCGATCGT GCGCGAGGAA
ATGAACCGGG CAGGCGCCAT CGAGCTGCTG ATGCCGGCCG TGCAGCCGGC CGAGCTGTGG
CAGGAGTCGG GCCGCTGGGA ACAGTACGGC CCCGAGCTGC TGCGCTTCAA GGACCGCAAG
GACAACGACT TCGTGATCGG GCCGACGCAC GAGGAAGTGG TCACCGACAT CGCGCGCAAC
CAGATCAAGA GCTACCGGCA GATGCCGGTG AACTTCTACC AGATCCAGAC GAAGTTCCGC
GACGAGATCC GTCCGCGCTT CGGCGTGATG CGCGGCCGCG AATTCCTCAT GAAGGACGCG
TATTCGTTCG ACAAGGACAC GGCCGGCCTG AACGAGTCGT ATCGCAAGAT GTACGACGCG
TACGTGCGCA TCTTCACGCG CCTCGGCCTC GAGTTCCGGG CGGTCGCGGC CGACAGCGGC
TCGATCGGCG GCAACTTCTC GCACGAGTTC CACGTGATCG CTGATACCGG CGAGGACGCG
ATCGCGTACT GCCCGACGTC CGACTTCGCG GCGAACATCG AAGCGGCCGA GGCGCTGCCG
TTGATCGCCG AGCGTGCCGC ACCGGCCGAA GCGATGGAGA AGGTCGCGAC GCCCGGCAAG
GCGAAGTGCG AAGCGGTCGC CGAACTGCTG GCAATCCCGC TCGAGCGCAC GATCAAGTCG
ATCGTGCTCG CCACCGAGAA CGAAGGCGCC GAGCCGACCA TCTGGCTCAT CATGCTGCGC
GGCGACCACG ACCTGAACGA GATCAAGGTG TCGAAGCTGC CGGGGCTGAA GAACCACCGC
TTCGCGACCG AGCAGGAAAT CGTCGACTGG TTCGGCACGC CGCCGGGCTA TCTCGGCCCG
GTCGGCACGA AGAAGCCGGT GAAGGTGATC GCCGATCGCA CGGTCGCGAA CATGAGCGAC
TTCGTCGTCG GCGCGAACGA GGTCGACTAT CACATCGCGG GCGTGAACTG GGGCCGCGAC
CTGCCGGAAC CGGAAGTCGC CGATGTGCGC GACGTGAAGA AGGGCGATCC GTCGCCGGAC
GGCAAGGGCA CGATCGACAT CTGCCGCGGC ATCGAAGTCG GTCACGTGTT CCAGCTCGGC
ACCAAGTATT CGGACGCGAT GGGCGCGACG TTCCTCGATG AATCGGGCAA GCCGCAGCCG
ATGCTGATGG GCTGCTACGG CGTCGGCATC ACGCGGATTC TCGGCGCGGC GATCGAACAG
AACTTCGACG ATAAGGGCAT CATCTGGCCC GAGTCGATCG CGCCGTTCGA GGTCGTGCTG
TGCCCGATGG GCTACGATCG CAGCGACATG GTCCGCGAGG CCGCCGACAA GCTGTACGCG
GAACTGGCCG CCGCCGGCAT CGACGTGATC CTCGACGATC GCGGCGAGCG CCCGGGCGTG
ATGTTCGCCG ACTGGGAACT GATCGGCGTG CCGCATCGCC TGGTGATCGG CGAGCGCGGC
CTGAAGGAAG GCAAGATCGA GTACCAGGGC CGCCGCGACG CGGAGGCGAC GCTGCTGCCG
GCGGACGAGG CTGCGGCGAC GGTGACGGAG AAGATCCGCG CCGCGCTCGC GCACTAA
|
|---|
| Protein sequence | MKASRFFIGT LKEAPADAEI VSHKLMVRAG MIRRVAGGIY NYLPVGLRSI RKVEAIVREE
MNRAGAIELL MPAVQPAELW QESGRWEQYG PELLRFKDRK DNDFVIGPTH EEVVTDIARN
QIKSYRQMPV NFYQIQTKFR DEIRPRFGVM RGREFLMKDA YSFDKDTAGL NESYRKMYDA
YVRIFTRLGL EFRAVAADSG SIGGNFSHEF HVIADTGEDA IAYCPTSDFA ANIEAAEALP
LIAERAAPAE AMEKVATPGK AKCEAVAELL AIPLERTIKS IVLATENEGA EPTIWLIMLR
GDHDLNEIKV SKLPGLKNHR FATEQEIVDW FGTPPGYLGP VGTKKPVKVI ADRTVANMSD
FVVGANEVDY HIAGVNWGRD LPEPEVADVR DVKKGDPSPD GKGTIDICRG IEVGHVFQLG
TKYSDAMGAT FLDESGKPQP MLMGCYGVGI TRILGAAIEQ NFDDKGIIWP ESIAPFEVVL
CPMGYDRSDM VREAADKLYA ELAAAGIDVI LDDRGERPGV MFADWELIGV PHRLVIGERG
LKEGKIEYQG RRDAEATLLP ADEAAATVTE KIRAALAH
|
|---|
| |