| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_0420 |
|---|
| Symbol | |
|---|
| ID | 4311413 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 469833 |
|---|
| End bp | 470456 |
|---|
| Gene Length | 624 bp |
|---|
| Protein Length | 207 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638148208 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_772313 |
|---|
| Protein GI | 115350474 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.802184 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGATCA AGGCCGTGGT GTTCGATTTC GGCGGCGTGC TGATCGACTG GAGCCCGGAA
TATCTGTACC GGCAACTGAT TCCGGACGAA ACCGAGCGTC GCTGGTTCCT CACGCACGTG
TGCGCGATGG ACTGGGTGAT CCGCCAGGAC GGCGGCCAGA CGATCGACGA CGGAACGAGC
GAGCTCGTCA CGAAGTTTCC GGAGCACGAG GCGCTGATCC GCGCGTTCTA CGCACGCTGG
CACGAGATGA TCGGCGGCGT GCTCGACGAC GGCGCCGCGC TCGTCGACCG CCTCGACGCG
CAAGGGATGC CGCTCTTCGG GTTGACCAAC TGGTCCGCGC AGACCTTTCC GTATGCATGG
GACAACTTCC CGGTGCTGCG GCGCTTCAAG GACATCGTCG TGTCGGGCCG CGTGAAGCTC
GTGAAACCCG ATCCGGCGAT CTATCGCGAA ATGCATGCGC GAATCGATCC GCATCTGCCG
GGCATCGCGC CGCACGAGCT CGTGTTCATC GACGACAACG CGAACAACGC GGCGGCCGCG
ACGGCGCTCG GCTGGCATGG CATTCATCAC ACGAGCGCGG CCGCGACCGA GGCGCGCCTG
CGCGAACTGG GCGCGCTCGC GTAG
|
|---|
| Protein sequence | MTIKAVVFDF GGVLIDWSPE YLYRQLIPDE TERRWFLTHV CAMDWVIRQD GGQTIDDGTS
ELVTKFPEHE ALIRAFYARW HEMIGGVLDD GAALVDRLDA QGMPLFGLTN WSAQTFPYAW
DNFPVLRRFK DIVVSGRVKL VKPDPAIYRE MHARIDPHLP GIAPHELVFI DDNANNAAAA
TALGWHGIHH TSAAATEARL RELGALA
|
|---|
| |