Gene Bamb_0404 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_0404 
Symbol 
ID4309785 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008390 
Strand- 
Start bp453999 
End bp454622 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content67% 
IMG OID638148192 
ProductTetR family transcriptional regulator 
Protein accessionYP_772297 
Protein GI115350458 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGGGCA TCGAGGCCGT CAACAAGCCG CCGGCACGCC GCACGCGCCG GCCGATCGCC 
GCGGCCGCGG CGCACGAACA TCTGCTGCGC GCCGCCGAGG AGCTGTTTTA CAAGGAAGGG 
GTGCGCGCGG TCGGTGTCGA GGCGGTCGTG GAACTCGCGG GCGTCAACAA GATGAGCTTG 
TACCGCCAGT TCTCGTCGAA GGACGAGCTG ATCCTCGCGT ATCTGGAGCG AATGGATGCG 
TGCTTCTTCG AGCGTTTCGA TTCGAGCATC GCGAAGCATC CGGGCCAGCC GAAGGCGCAG 
TTGATCCAGT ATTTCGTCGA TCTCGCGGAG CGCGCGACGC AGAAGGACTA TCGCGGCTGC 
CCGTTCGTCA ACGTCGCGGC CGAATTCCCC GATGCTTCGC ACCCGGCCCG CGAGCGCGTC 
GCGCAGAACA AGGAACAGCT GATGAAGCGG CTCGTCGCGT TGTGCGACAG CGCCGGCGCA 
CGGCAGCCGC AAGCGCTCGC CGATGCGCTC GCGCTGGTGG TCGAAGGCAT CTACGCGGCC 
AGCCAGACGT ATCGGCACGG CGAAACGCCG ATCGGCACCG CGCCCGCGCT GGTCACGCAG 
CTGATCGAAG CCGGCTGCGC GTGA
 
Protein sequence
MSGIEAVNKP PARRTRRPIA AAAAHEHLLR AAEELFYKEG VRAVGVEAVV ELAGVNKMSL 
YRQFSSKDEL ILAYLERMDA CFFERFDSSI AKHPGQPKAQ LIQYFVDLAE RATQKDYRGC 
PFVNVAAEFP DASHPARERV AQNKEQLMKR LVALCDSAGA RQPQALADAL ALVVEGIYAA 
SQTYRHGETP IGTAPALVTQ LIEAGCA