Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_0357 |
Symbol | |
ID | 4308796 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008390 |
Strand | - |
Start bp | 397065 |
End bp | 398270 |
Gene Length | 1206 bp |
Protein Length | 401 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 638148145 |
Product | peptidase S1 and S6, chymotrypsin/Hap |
Protein accession | YP_772251 |
Protein GI | 115350412 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family [TIGR02038] periplasmic serine pepetdase DegS |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.12639 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTTAGAC GCTTCTGGCT GTTCTTCGCG CAGGCGGTGA CCGTACTGCT CGCGCTGATG TTCATCGTCG TGACGCTCAA GCCGCAATGG CTGCAACGGC AAGGACAGCT CGGCAAGCAG CTCGCCACGC CGATCGTTGC GTTGCGGGAA GTAGCGCCGG GCATCGGCGG AGCGCCGGCG ACCACGTCGT ACGCGGAAGC CGCGCAAAAG GCGATGCCCG CCGTCGTCAA CGTATTCTCC AGCAAGGACG GCTCGCTGCC GCCCGATCCG CGGGCGAAGG ATCCGCTGTT CCGCTATTTC TTCGGCGACC GCAACGCACG CAAGCAGCAG GACGAACCGG CCGCCAACCT CGGCTCCGGC GTCATCGTGA GCCCTGAAGG TTACATTCTA ACGAACCAGC ACGTCGTGGA CGGCGCCGAC CAGATCGAAG TCGCGCTCGC CGACGGCCGC ACGGCCACCG CGAAGGTGAT CGGCAGCGAC CCCGAGACCG ATCTCGCCGT CCTGAAGATC AACATGACGA ACCTGCCGAC GATCACGCTC GGCCGTTCCG ACCAGTCGCG GGTCGGCGAC GTCGTCCTCG CGATCGGCAA CCCGTTCGGC GTCGGCCAGA CGGTCACGAT GGGGATCATC AGCGCGCTCG GCCGCAATCA CCTCGGCATC AACACCTTCG AGAACTTCAT CCAGACCGAT GCGCCGATCA ACCCCGGCAA CTCGGGCGGC GCGCTGGTCG ACGTGAACGG CAACCTGCTC GGCATCAACA CGGCGATCTA TTCGCGCTCG GGCGGCTCGC TCGGCATCGG CTTCGCGATC CCTGTGTCGA CCGCGCGCAC CGTGCTCGAA AGCATCATCA CGACCGGCTC GGTCACGCGC GGCTGGATCG GCGTCGAGCC GCAGGACGTC ACGCCGGAAA TCGCCGAGTC GTTCGGGCTC CAGCAGAAGA CGGGCGCGAT CGTCGCGGGC GTGCTGCAGG GCGGTCCGGC AGACAAGGCC GGCATCAAGC CGGGCGACAT CCTCGTGAGC GTGAACGGCG ACGAAATCAC CGACACCACA AAGCTGCTGA ACACCGTCGC GCAGATCAAG CCGGGCACGT CGACCAAGGT GCACGTCGTG CGCAAGGGCA AGGAATTCGA CGTGAACGTC GTGATCGGCA AGCGCCCGCC GCCGCCGAAG CAGGCGCTCG ACGAACAGGA CAGCGACAGC GAGTGA
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Protein sequence | MLRRFWLFFA QAVTVLLALM FIVVTLKPQW LQRQGQLGKQ LATPIVALRE VAPGIGGAPA TTSYAEAAQK AMPAVVNVFS SKDGSLPPDP RAKDPLFRYF FGDRNARKQQ DEPAANLGSG VIVSPEGYIL TNQHVVDGAD QIEVALADGR TATAKVIGSD PETDLAVLKI NMTNLPTITL GRSDQSRVGD VVLAIGNPFG VGQTVTMGII SALGRNHLGI NTFENFIQTD APINPGNSGG ALVDVNGNLL GINTAIYSRS GGSLGIGFAI PVSTARTVLE SIITTGSVTR GWIGVEPQDV TPEIAESFGL QQKTGAIVAG VLQGGPADKA GIKPGDILVS VNGDEITDTT KLLNTVAQIK PGTSTKVHVV RKGKEFDVNV VIGKRPPPPK QALDEQDSDS E
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