Gene Bamb_0306 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_0306 
Symbol 
ID4308780 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008390 
Strand
Start bp345277 
End bp347670 
Gene Length2394 bp 
Protein Length797 aa 
Translation table11 
GC content67% 
IMG OID638148094 
Product1A family penicillin-binding protein 
Protein accessionYP_772200 
Protein GI115350361 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG5009] Membrane carboxypeptidase/penicillin-binding protein 
TIGRFAM ID[TIGR02074] penicillin-binding protein, 1A family 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCTATGC AATCCACGTC TCCTACGTCC CCGCCTCCCC CGCCGGAGCC GAAGAAACGG 
CCCTGGTGGC AGAAAGCCCT GATCGGCGTC GCCGCGATGT GCGTGGCCCT CGTCGTGGCC
GGCGGCCTCG TGCTCGGCTA CGCGCTCGTC GTCGCGTGGC CGAACATGCC GTCGCTCGAC
GCGCTGACCG ACTATCGTCC GAAGGTACCG CTGCGCATCT ACACGTCCGA TCACGTGCTG
ATCGGCGAAT TCGGCGAGGA ACGCCGCGAC ATCGTCCATT TCAAGGAGGT GCCCGACTCG
CTCAAGAAGG CGATCCTCGC GATCGAGGAC GCACGCTTCT ACGATCACGG CGGCGTCGAC
CTCACCGGCA TCGCCCGCGC CGGCTTCGTC GCGCTGACGA ACGGCCATGC GTCGCAGGGC
GCGAGCACGA TCACGATGCA GGTCGCGCGC AACTTCTTCC TGTCGAGCGA GAAGACCTAC
ACGCGCAAGA TCTACGAGAT GCTGCTCGCG TACCGCATCG AGCGCGCGCT GACGAAGGAT
CAGATTCTCG AGGTCTATAT GAATCAGATC TATCTCGGCC AGCGTGCGTA CGGCTTCGCG
AGCGCCGCGC GCGTGTATTT CGGCAAGGAC CTGAAGGACA TCACGCTCGC GGAAGCGGCG
ATGCTAGCGG GGCTGCCGAA GGCGCCGTCC GCGTATAACC CGGTCGTCAA CCCGAAGCGC
GCGAAGGTCC GCCAGGAATA CATCCTGCAG CGGATGCTCG AGCTGAACTT CATCACGCGC
GAGCAGTACG ACGAGGCTGC CGCGCAGCCG CTCGTCGTCA AGGGCGCGGG CCGCGAGTTC
AGCGTGCACG CCGAGTACGT CGCGGAAATG GTCCGGCAGA TGATGTATGC GCAGTACCGC
GAGGAAACCT ACACGCGCGG CTTCAACGTC GTCACGACGA TCGATTCCGC CGACCAGCAG
GTCGCGTACA CCGCGCTGCG CAAGGGCATC ATGGATTACG AGCGTCGCCA CGGCTATCGC
GGGCCGGAAG GCTTCATCGA GCTGCCGGCC GGCGCCGACG ACCGCGAACA GGCGATCGAC
GACGCGCTGC TCGAGCATCC CGACAACGGC GAATTGATCG CGGCGGTCGT CACCGCGGCC
ACCCCGCGCC AGATCACGGT AGCCTTCATC GACGGCAGCA CCGCGACGAT CGAAGGCGAC
AACCTGCGCT TCGCGTCGGG CGCGCTGTCG GCCAACGCGC AGCCGAACCG CCGCATCCGC
CCGGGCGCGA TCGTCCGTGT CGTGAAGAAC GACGCCGGCA AGTGGTCGAT CACGCAGTTG
CCGCAGGTCG AGGGCGCGTT CATCTCGATC GTCCCGCAAG ACGGCGCGAT CCGCTCGCTC
GTCGGCGGCT TCGACTACAA CAAGAACAAG TTCAACCACG TCACGCAGGC GTGGCGGCAA
CCGGGTTCGT CGTTCAAGCC GTTCATCTAC TCGGCGTCAC TCGACAAGGG CCTCGGGCCG
GCCACGGTGA TCAACGACGG CCCGCTGTAT TTCAGCGCCG CGGAAACCGG CGGCCAGCCG
TGGGAACCGA AGAACTACGG CGGCGGCTTC GAAGGTCCGA TGTCGATGCG CACCGCGCTG
CAGCGCTCAC GCAACCTCGT GTCGATCCGG ATCCTGAACC AGATCGGCAC GAAGTACGCG
CAGCAGTACA TCACGCGCTT CGGCTTCGAC GCCGACCGCC ATCCGGCCTA CCTGCCGATG
GCGCTCGGTG CGGGCCAGGT CACGCCGCTG CAGATGGCCG GCGCGTACTC GGTGTTCGCG
AACGGCGGCT TCCGCGTGAA CCCGTATCTG ATCGCCGAAG TGACCGATCC GAACGGCGCG
ATCGTCGCAC GCGCGCAGCC GCTCATCGCC GAGCAGAACG CGCCGCGCGC GATCGACGCA
CGCAACGCGT ACGTGACGAA CAGCCTGCTG CAGAGCGTCG CGCAGCGCGG CACGGGCGCA
CGCACCAACG TGCTGAAGCG CACCGACCTC GCGGGCAAGA CTGGTACGAC GAACGACTCG
CACGACGCGT GGTTCGCCGG CTACCAGCAC ACGCTCGCGG CGATCGCATG GATCGGCTAC
GACAATCCGC GCAGCCTCGG CGATCGCGAA ACCGGCGGCG GCCTGTCGCT GCCGGTCTGG
ATCGAATACA TGGGTGCGGC GCTGAAGGGC GTGCCGGAGT TCAAGCCGAC GATGCCGGAC
GACGTCCAGT CGATCGGCGG CGAGCTGTAC TTCACCGAGT TCACGCCGGG GCACGGCTTC
GTATCGACGG TCGGCGTGCC GCAGGCGCCG GCTGTGCAGG ACACCGAGGA ACCGGTGCCG
CACGTCGACG AGCAGGAAAA GCAGGACATC ATGAACCTGT TCCGCGGCCA CTGA
 
Protein sequence
MPMQSTSPTS PPPPPEPKKR PWWQKALIGV AAMCVALVVA GGLVLGYALV VAWPNMPSLD 
ALTDYRPKVP LRIYTSDHVL IGEFGEERRD IVHFKEVPDS LKKAILAIED ARFYDHGGVD
LTGIARAGFV ALTNGHASQG ASTITMQVAR NFFLSSEKTY TRKIYEMLLA YRIERALTKD
QILEVYMNQI YLGQRAYGFA SAARVYFGKD LKDITLAEAA MLAGLPKAPS AYNPVVNPKR
AKVRQEYILQ RMLELNFITR EQYDEAAAQP LVVKGAGREF SVHAEYVAEM VRQMMYAQYR
EETYTRGFNV VTTIDSADQQ VAYTALRKGI MDYERRHGYR GPEGFIELPA GADDREQAID
DALLEHPDNG ELIAAVVTAA TPRQITVAFI DGSTATIEGD NLRFASGALS ANAQPNRRIR
PGAIVRVVKN DAGKWSITQL PQVEGAFISI VPQDGAIRSL VGGFDYNKNK FNHVTQAWRQ
PGSSFKPFIY SASLDKGLGP ATVINDGPLY FSAAETGGQP WEPKNYGGGF EGPMSMRTAL
QRSRNLVSIR ILNQIGTKYA QQYITRFGFD ADRHPAYLPM ALGAGQVTPL QMAGAYSVFA
NGGFRVNPYL IAEVTDPNGA IVARAQPLIA EQNAPRAIDA RNAYVTNSLL QSVAQRGTGA
RTNVLKRTDL AGKTGTTNDS HDAWFAGYQH TLAAIAWIGY DNPRSLGDRE TGGGLSLPVW
IEYMGAALKG VPEFKPTMPD DVQSIGGELY FTEFTPGHGF VSTVGVPQAP AVQDTEEPVP
HVDEQEKQDI MNLFRGH