Gene Bamb_0292 details

Gene Information

• Locus tag: Bamb_0292
• Symbol: rpsD
• ID: 4311296
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia ambifaria AMMD
• Kingdom: Bacteria
• Replicon accession: NC_008390
• Strand: +
• Start bp: 331446
• End bp: 332087
• Gene Length: 642 bp
• Protein Length: 213 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 638148080
• Product: 30S ribosomal protein S4
• Protein accession: YP_772186
• Protein GI: 115350347
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0522] Ribosomal protein S4 and related proteins
• TIGRFAM ID: [TIGR01017] ribosomal protein S4, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 34
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGATAAAGG AATGCAACGT GGCACGTTAT ATCGGCCCCA AGGCCAAGCT GTCCCGCCGT 
GAAGGCACCG ACCTGTTCCT GAAGAGCGCG CGCCGCTCGC TCGCCGACAA GTGCAAGCTC 
GACAGCAAGC CGGGTCAGCA CGGCCGTACC TCGGGCGCAC GTACGTCCGA CTATGGTACG 
CAGCTGCGCG AAAAGCAGAA GGTCAAGCGT ATTTACGGCG TGCTGGAGCG TCAGTTCCGC 
CGCTACTTCG CTGAAGCCGA CCGCCGCAAG GGCAACACGG GTGAAAACCT GCTGCAACTG 
CTCGAGTCGC GTCTCGACAA CGTCGTGTAT CGCATGGGCT TCGGCTCGAC CCGCGCTGAA 
GCGCGTCAGC TGGTGAGCCA CAAGTCGATC ACCGTGAACG GCGTCGTCGC GAACGTGCCG 
TCGCAGCAAG TGAAGGCGGG TGACATCGTC GCGATCCGCG AAAAGGCGAA GAAGCAGGCG 
CGTATCGTCG AAGCGCTGTC GCTGGCCGAG CAAGGCGGCA TGCCGAGCTG GGTTGCAGTC 
GATGCGAAGA AGTTCGAAGG CACGTTCAAG CAAATGCCGG AACGCGCTGA CATCGCAGGC 
GACATCAACG AAAGCCTGAT CGTCGAATTG TATTCGCGTT AA 

 

Protein sequence

MIKECNVARY IGPKAKLSRR EGTDLFLKSA RRSLADKCKL DSKPGQHGRT SGARTSDYGT 
QLREKQKVKR IYGVLERQFR RYFAEADRRK GNTGENLLQL LESRLDNVVY RMGFGSTRAE 
ARQLVSHKSI TVNGVVANVP SQQVKAGDIV AIREKAKKQA RIVEALSLAE QGGMPSWVAV 
DAKKFEGTFK QMPERADIAG DINESLIVEL YSR