| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_0260 |
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| Symbol | |
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| ID | 4309485 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008390 |
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| Strand | + |
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| Start bp | 307764 |
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| End bp | 312005 |
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| Gene Length | 4242 bp |
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| Protein Length | 1413 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638148048 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_772154 |
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| Protein GI | 115350315 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGCTC TGCTCGATCT ATTCAAGCAA GTCCAACAGG AAGAAGTTTT CGACGCGATC
AAGATCGGTC TGGCCTCGCC GGACAAGATC CGTTCGTGGT CGTTCGGCGA AGTGAAGAAG
CCGGAGACCA TCAACTACCG CACGTTCAAG CCGGAACGCG ATGGTCTGTT CTGCGCGAAG
ATCTTCGGGC CGATCAAGGA CTACGAGTGC CTGTGCGGCA AGTACAAGCG CCTGAAGCAC
CGCGGCGTGA TCTGCGAGAA GTGCGGCGTC GAAGTGACGC TGGCGAAGGT GCGTCGCGAA
CGCATGGGCC ACATCGAGCT GGCCTCGCCG GTCGCGCACA TCTGGTTCCT GAAGTCGCTG
CCGTCGCGTC TGGGCATGGT GCTCGACATG ACGCTGCGCG ACATCGAACG CGTGCTGTAT
TTCGAAGCGT ACGTGGTGAT CGAACCGGGC ATGACGCCGC TGAAGGCGCG GCAGATCATG
ACCGAAGAGG ATTACTACAA CAAGGTCGAG GAATACGGCG ACGAATTCCG TGCCGAGATG
GGCGCGGAAG GCGTGCGTGA ACTGCTGCGC GCAATCAACA TCGACGAGCA GGTCGAGACG
CTGCGCACCG AGCTGAAGAA CACCGGCTCG GAAGCGAAGA TCAAGAAGTA TGCGAAGCGC
CTGAAGGTCC TCGAGGCATT CCAGCGCTCG GGCATCAAGC CCGAGTGGAT GATCCTCGAA
GTGCTGCCGG TGCTGCCGCC GGAACTGCGT CCGCTCGTGC CGCTGGACGG CGGCCGTTTC
GCGACGTCGG ACCTGAATGA CCTGTATCGC CGCGTGATCA ACCGTAACAA CCGGTTGAAG
CGTCTGCTCG AGCTGAAGGC GCCTGAAATC ATCGTCCGCA ACGAAAAGCG GATGCTGCAG
GAAGCCGTCG ACTCGCTGCT CGACAACGGT CGTCGCGGCA AGGCGATGAC GGGCGCGAAC
AAGCGTCCGC TGAAGTCGCT CGCCGACATG ATCAAGGGTA AGGGCGGTCG TTTCCGTCAG
AACCTGCTGG GCAAGCGCGT CGACTACTCG GGCCGTTCGG TCATCGTGGT GGGCCCGACG
CTGAAGCTGC ACCAGTGCGG TCTGCCGAAG CTGATGGCGC TCGAACTGTT CAAGCCGTTC
ATCTTCAACA AGCTGGAAGT GATGGGCGTC GCGACGACCA TCAAGGCTGC GAAGAAGGAA
GTCGAGAACC AGACGCCGGT GGTGTGGGAC ATCCTCGAAG AGGTGATCCG CGAGCACCCG
GTGATGCTGA ACCGTGCGCC GACGCTGCAC CGTCTCGGTA TCCAGGCGTT CGAGCCCGTG
CTGATCGAAG GCAAGGCGAT CCAGCTGCAC CCGCTCGTCT GCGCGGCGTT CAACGCCGAC
TTCGACGGTG ACCAGATGGC CGTTCACGTG CCGCTGTCGC TCGAAGCGCA GATGGAAGCG
CGTACGCTGA TGCTGGCGTC GAACAACGTG CTGTTCCCGG CCAACGGCGA TCCTTCGATC
GTGCCGTCGC AGGATATCGT GCTGGGTCTG TACTACGCGA CCCGCGAAGC GATCAACGCG
AAGGGCGAAG GCCTGTCGTT CACCGGCGTG TCGGAAGTGA TCCGCGCGTA CGAGAACAAG
GAAGTCGAGC TGGCGTCGCG CGTCAACGTG CGGATCACCG AAATGGTTCG CAACGAGGAC
ACGTCGGAAG GCGCGCCGCA ATTCGTGCCG AAGATCTCGC TGTACGCGAC GACCGTCGGT
CGCGCGATCC TGTCGGAGAT CCTGCCGCAC GGCCTGCCGT TCTCGGTGCT GAACAAGCCG
CTGAAGAAGA AGGAAATCTC GCGCCTGATC AACACCGCAT TCCGCAAGTG CGGTCTGCGT
GCGACGGTCG TGTTCGCCGA CCAGCTGATG CAGTCGGGTT TCCGTCTCGC GACGCGTGCC
GGTATTTCGA TCTGCGTGGA CGACATGCTC GTGCCGCCGC AGAAGGAAAC GATCGTCGGC
GACGCCGCGA AGAAGGTGAA GGAGTACGAC CGCCAGTACA TGTCGGGTCT CGTCACCGCG
CAGGAACGCT ACAACAACGT GGTCGACATC TGGTCGGCAA CGTCGGAAGC GGTCGGCAAG
GCGATGATGG AGCAGCTGTC GACGGAGCCG GTGACGGACC GCGACGGCAA CGAGACGCGC
CAGGAGTCGT TCAACTCGAT CTACATGATG GCCGACTCGG GCGCCCGGGG TTCGGCGGTG
CAGATTCGTC AGCTGGCCGG TATGCGTGGC CTGATGGCGA AGCCGGACGG CTCGATTATC
GAGACGCCGA TTACCGCGAA CTTCCGCGAA GGCCTGAACG TGTTGCAGTA CTTCATCTCG
ACCCACGGTG CACGTAAGGG TCTGGCTGAT ACGGCACTGA AGACCGCGAA CTCGGGTTAC
CTGACGCGTC GTCTCGTCGA CGTCACGCAG GATCTGGTGG TGGTCGAGGA CGATTGCGGC
ACGTCGAACG GCGTGGCGAT GAAGGCGCTG GTCGAAGGCG GTGAAGTCGT CGAGGCACTG
CGCGACCGTA TCCTCGGCCG CGTCGCGGTC GCGGACGTCG TGAACCCGGA AACGCAGGAA
ACGCTGTACG AATCGGGCAC GCTGCTCGAC GAAACGGCGG TCGAGGAAAT CGAACGCCTC
GGCATCGACG AAGTGCGCGT GCGCACGCCG CTGACCTGCG AAACGCGTTA CGGTCTGTGC
GCGGCCTGCT ACGGCCGTGA CCTGGGCCGC GGCTCGCTCG TGAACGTCGG CGAAGCAGTC
GGCGTGATCG CGGCACAGTC GATCGGCGAA CCGGGCACGC AGCTGACGAT GCGTACGTTC
CACATCGGTG GTGCGGCATC GCGTGCGGCA GTGGCGTCGT CGGTCGAAGC GAAGAGCAAC
GGTATCGTGC GCTTCACGGC GACGATGCGT TACGTCACCA ACGCGAAGGG CGAGCAGATC
GTCATTTCGC GTTCGGGCGA GGCGCTGATC ACCGACGATA TCGGCCGCGA GCGCGAACGT
CACAAAATCC CGTACGGCGC GACGCTGCTG CAGCTCGACG GCGCGGCGAT CAAGGCCGGC
ACGCAGCTGG CGACGTGGGA TCCGATGACG CGTCCGATCA TCACCGAGTA CGGTGGTACG
GTGAAGTTCG AGAACGTCGA GGAAGGCGTG ACCGTCGCGA AGCAGATCGA CGACGTGACC
GGCCTGTCGA CGCTGGTCGT GATCGACGTG AAGCGTCGTG GTTCGCAAGC TTCGAAGAGC
GTGCGTCCGC AGGTGAAGCT GCTCGACGCG AACGGCGAGG AAGTGAAGAT CCCGGGCACG
GAACACGCGG TGCAGATCGG CTTCCAGGTC GGCGCACTGA TCACCGTGAA GGACGGCCAG
CAAGTGCAGG TGGGTGAAGT GCTCGCACGT ATCCCGACCG AAGCGCAGAA GACGCGTGAC
ATTACCGGCG GTCTGCCGCG GGTGGCGGAA CTGTTCGAAG CGCGTTCGCC GAAGGATGCC
GGCATTCTCG CGGAAGTCAC CGGTACGACG TCGTTCGGCA AGGACACGAA GGGCAAGCAG
CGTCTCGTCA TCACGGACCT CGAAGGCAAT CAGCACGAGT TCCTGATCGC GAAGGAAAAG
CAGGTGCTGG TCCACGATGC TCAGGTCGTC AACAAGGGCG AAATGATCGT GGACGGCCCG
GCCGATCCGC ACGACATCCT GCGTCTGCAG GGTATCGAGG CGCTGTCGCG CTACATCGTC
GACGAAGTGC AGGACGTGTA TCGTCTGCAG GGCGTGAAGA TCAACGACAA GCACATCGAG
GTGATCGTTC GCCAGATGCT GCGTCGTGTG CAGATCACCG ACAACGGTGA TACGCGCTTC
ATCCCGGGCG AACAGGTCGA GCGTTCCGAC ATGCTGGACG AGAACGATCG CATGATCGCC
GAGGACAAGC GCCCGGCTTC GTACGACAAC GTGCTCCTCG GTATCACGAA GGCGTCGCTG
TCGACCGACT CGTTCATCTC GGCGGCATCG TTCCAGGAAA CGACCCGCGT GCTGACCGAA
GCGGCGATCA TGGGCAAGCG CGACGATCTG CGTGGCCTGA AGGAAAACGT GATCGTCGGC
CGTCTGATCC CGGCCGGTAC GGGTCTCGCG TTCCACAAGG CGCGCAAGGC GAAGGAGATG
TCCGACCGCG AGCGTTTCGA CCAGATCGCT GCGGAAGAGG CATTCGACTT CGGTACGCCG
AGCACGCCGG CGGAAGAGCC GCAACACCCG GCAGCCGAAT AA
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| Protein sequence | MKALLDLFKQ VQQEEVFDAI KIGLASPDKI RSWSFGEVKK PETINYRTFK PERDGLFCAK
IFGPIKDYEC LCGKYKRLKH RGVICEKCGV EVTLAKVRRE RMGHIELASP VAHIWFLKSL
PSRLGMVLDM TLRDIERVLY FEAYVVIEPG MTPLKARQIM TEEDYYNKVE EYGDEFRAEM
GAEGVRELLR AINIDEQVET LRTELKNTGS EAKIKKYAKR LKVLEAFQRS GIKPEWMILE
VLPVLPPELR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLELKAPEI IVRNEKRMLQ
EAVDSLLDNG RRGKAMTGAN KRPLKSLADM IKGKGGRFRQ NLLGKRVDYS GRSVIVVGPT
LKLHQCGLPK LMALELFKPF IFNKLEVMGV ATTIKAAKKE VENQTPVVWD ILEEVIREHP
VMLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAFNAD FDGDQMAVHV PLSLEAQMEA
RTLMLASNNV LFPANGDPSI VPSQDIVLGL YYATREAINA KGEGLSFTGV SEVIRAYENK
EVELASRVNV RITEMVRNED TSEGAPQFVP KISLYATTVG RAILSEILPH GLPFSVLNKP
LKKKEISRLI NTAFRKCGLR ATVVFADQLM QSGFRLATRA GISICVDDML VPPQKETIVG
DAAKKVKEYD RQYMSGLVTA QERYNNVVDI WSATSEAVGK AMMEQLSTEP VTDRDGNETR
QESFNSIYMM ADSGARGSAV QIRQLAGMRG LMAKPDGSII ETPITANFRE GLNVLQYFIS
THGARKGLAD TALKTANSGY LTRRLVDVTQ DLVVVEDDCG TSNGVAMKAL VEGGEVVEAL
RDRILGRVAV ADVVNPETQE TLYESGTLLD ETAVEEIERL GIDEVRVRTP LTCETRYGLC
AACYGRDLGR GSLVNVGEAV GVIAAQSIGE PGTQLTMRTF HIGGAASRAA VASSVEAKSN
GIVRFTATMR YVTNAKGEQI VISRSGEALI TDDIGRERER HKIPYGATLL QLDGAAIKAG
TQLATWDPMT RPIITEYGGT VKFENVEEGV TVAKQIDDVT GLSTLVVIDV KRRGSQASKS
VRPQVKLLDA NGEEVKIPGT EHAVQIGFQV GALITVKDGQ QVQVGEVLAR IPTEAQKTRD
ITGGLPRVAE LFEARSPKDA GILAEVTGTT SFGKDTKGKQ RLVITDLEGN QHEFLIAKEK
QVLVHDAQVV NKGEMIVDGP ADPHDILRLQ GIEALSRYIV DEVQDVYRLQ GVKINDKHIE
VIVRQMLRRV QITDNGDTRF IPGEQVERSD MLDENDRMIA EDKRPASYDN VLLGITKASL
STDSFISAAS FQETTRVLTE AAIMGKRDDL RGLKENVIVG RLIPAGTGLA FHKARKAKEM
SDRERFDQIA AEEAFDFGTP STPAEEPQHP AAE
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