Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_0259 |
Symbol | rpoB |
ID | 4309484 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008390 |
Strand | + |
Start bp | 303636 |
End bp | 307742 |
Gene Length | 4107 bp |
Protein Length | 1368 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 638148047 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_772153 |
Protein GI | 115350314 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.84046 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAATATT CCTTCACCGA GAAGAAGCGC ATTCGCAAGA GTTTCGCGAA GCGCCCCATC GTTCACCAAG TTCCGTTCTT GCTGGCCACC CAGCTTGAAT CATTCAGCAC GTTTCTGCAA GCCGATGTGC CGGGCACGCA ACGCAAGCCT GAAGGTTTGC AGGCCGCCTT CACATCGGTA TTTCCCATTG TTTCGCACAA CGGTTTCGCG CGCCTCGAGT TCGTGAGCTA TGCGCTGTCC TCGCCGGCAT TCAACATCAA GGAATGCCAG CAGCGGGGCC TGACGTACTG CTCCGCGCTG CGCGCGAAGG TCCGCCTCGT CATCCTCGAC AAGGAATCGC CGAACAAGCC GGTCGTCAAG GAAGTGAAGG AGCAGGAAGT GTACATGGGC GAAATTCCGC TCATGACGCC GACGGGCTCG TTCGTCATCA ACGGCACCGA GCGTGTCATC GTCTCGCAGC TGCACCGTTC GCCGGGCGTG TTCTTCGAAC ACGACAAGGG CAAGACGCAC AGCTCGGGCA AGCTGCTGTT CTCGGCACGG ATCATTCCGT ACCGCGGCTC GTGGCTCGAC TTCGAATTCG ATCCGAAGGA CATCCTGTAC TTCCGCGTCG ACCGTCGCCG CAAGATGCCG GTCACGATCC TGCTGAAGGC CATCGGCCTC ACGCCGGAAC AGATCCTCGC GAACTTCTTC GTGTTCGACA ACTTCACGCT GATGGACGAA GGCGCGCAAC TCGAGTTCGT GCCCGAGCGC CTGCGTGGTG AAGTCGCGCG CTTCGACATC ACGGATCGCG ACGGCAAGGT CATCGTCCAG AAGGACAAGC GGATCAACGC GAAGCACATT CGCGACCTCG AAGCCGCGAA GACCAAGTTC ATCTCGGTGC CGGAAGACTA TCTGCTCGGC CGCGTGCTGG CGAAGAACGT CGTCGACGGC GACACCGGCG AAGTGATCGC GAGCGCGAAC GACGAAGTCA CGGAAAGCGT GCTCGAGAAG CTGCGCGAAG CGGGCATCAA GGAAATCCAG ACGCTCTACA CGAACGATCT GGACCAGGGT CCGTACATCT CGTCGACGCT GCGTGTCGAC GAAACGACCG ACAAGACGGC CGCGCGCATT GCGATCTACC GCATGATGCG CCCGGGCGAG CCGCCGACCG AAGAAGCGGT CGAGGCGCTG TTCAACCGTC TGTTCTACAG CGAAGAAGCG TACGACCTGT CGAAGGTCGG CCGCATGAAG TTCAACCGCC GCGTCGGCCG TGACGAGATC ACCGGCCCGA TGACGCTGCA GGACGACGAC ATCCTCGCGA CGATCAAGAT CCTCGTCGAG CTGCGCAACG GCAAGGGCGA AGTGGACGAC ATCGACCACC TCGGCAACCG CCGCGTGCGT TGTGTCGGCG AACTGGCCGA AAACCAGTTC CGCGCGGGTC TCGTGCGTGT CGAGCGCGCG GTCAAGGAAC GCCTCGGCCA GGCCGAAAGC GAAAACCTGA TGCCGCACGA CCTGATCAAC TCGAAGCCGA TTTCGTCGGC GATCCGCGAG TTCTTCGGTT CGTCGCAGCT ATCGCAGTTC ATGGACCAGA CCAACCCGCT GTCGGAAATC ACGCACAAGC GCCGTGTTTC CGCACTGGGC CCGGGCGGTC TGACGCGCGA ACGCGCAGGC TTCGAAGTTC GTGATGTGCA CCCGACCCAC TATGGCCGCG TGTGCCCGAT CGAAACGCCG GAAGGTCCGA ACATCGGCCT GATCAACTCG CTCGCACTGT ACGCGCACCT GAACGAGTAC GGCTTCCTCG AGACGCCGTA CCGCAAGGTC GTGGACAGCA AGGTGACCGA CCAGATCGAT TACCTGTCGG CGATCGAGGA AGGCCGCTAC ATGATCGCTC AGGCGAACGC CGCGATCGAC GAGAACGGCC AGCTGGTCGA CGAACTCGTG TCGTCGCGTG AAGCCGGCGA AACGATGATG GTCACGCCGG ACCGTATCCA GTACATGGAC GTCGCGCCGT CGCAGATCGT GTCGGTTGCA GCATCGCTGA TCCCGTTCCT CGAGCACGAC GATGCGAACC GTGCACTGAT GGGTTCGAAC ATGCAGCGTC AGGCCGTGCC GTGTCTGCGT CCGGAAAAGC CGGTCGTCGG TACGGGCATC GAGCGCACCT GCGCGGTCGA CTCGGGCACG ACGGTTCAGG CGTTCCGCGG CGGCGTCGTC GACTATGTCG ACGCAGGCCG TATCGTGATT CGCGTGAACG ACGACGAAGC CGTCGCAGGT GAAGTCGGTG TCGACATCTA CAACCTGATC AAGTACACGC GTTCGAACCA GAACACGAAC ATCAACCAGC GTCCGATCGT GAAGATGGGC GACAAGGTCT CGCGCGGCGA CGTGCTGGCC GACGGCGCCT CGACGGACCT GGGCGAGCTC GCGCTCGGCC AGAACATGCT GATCGCGTTC ATGCCGTGGA ACGGCTACAA CTTCGAGGAT TCGATCCTGA TCTCGGAGAA GGTGGTCGCC GACGATCGCT ACACGTCGAT CCACATCGAA GAGCTGAACG TCGTTGCACG CGACACGAAG CTCGGGCCGG AAGAAATCAC GCGCGACATC TCGAACCTGG CGGAAGTCCA GCTCGGCCGT CTCGACGAAT CGGGCATCGT GTACATCGGT GCGGAAGTCG AAGCGGGCGA CGTGCTGGTC GGCAAGGTCA CGCCGAAGGG CGAGACCCAG CTGACGCCGG AAGAAAAGCT GCTGCGCGCG ATCTTCGGCG AGAAGGCCTC GGACGTGAAG GACACGTCGC TGCGCGTGCC GTCGGGCATG AGCGGTACCG TGATCGACGT CCAGGTGTTC ACGCGTGAAG GCATCCAGCG CGACAAGCGT GCGCAACAGA TCATCGACGA CGAACTGAAG CGCTACCGTC TCGACCTGAA CGACCAGCTG CGCATCGTGG AAGGCGACGC GTTCCAGCGT CTCGCGCGCA TGCTCGTGGG CAAGGTCGCG AACGGCGGTC CGAAGAAGCT CGCGAAGGGC ACGAAGATCG ACCAGGCTTA CCTGGAAGAC CTCGACCACT ACCACTGGTT CGACATCCGC CTGGCGGACG ACGAAGCAGC GGCGCAGCTC GAAGCGATCA AGAACTCGAT CGAGGAAAAG CGTCACCAGT TCGACCTCGC GTTCGAAGAG AAGCGCAAGA AGCTCACGCA AGGCGACGAA CTGCCGCCGG GCGTGCTGAA GATGGTCAAG GTGTACCTCG CGGTGAAGCG TCGTCTGCAG CCTGGCGACA AGATGGCAGG CCGTCACGGT AACAAGGGTG TCGTGTCGAA GATCGTCCCG ATCGAAGACA TGCCGTACAT GGCCGATGGC CGTCCGGCCG ACGTCGTGCT GAACCCGCTC GGCGTGCCGT CGCGGATGAA CGTGGGTCAG GTTCTGGAAG TGCACCTCGG CTGGGCCGCG AAGGGCCTCG GCTGGCGTAT CGGCGAAATG CTGCAGCGTC AGGCGAAGAT CGAGGAAATG CGTTCGTTCC TGACGAAGAT CTACAACGAC TCGGGTCGCA AGGAAGATCT GGAAAGCTTC ACCGACGACG AGATCCTCGA ACTCGCGAAG AACCTGCGCG AAGGCGTGCC GTTCGCGACG CCGGTGTTCG ACGGTGCGAC CGAGGAAGAA ATGGGCAAGA TGCTCGACCT CGCGTTCCCG GACGACATCG CCGAACAGCT CGGCATGAAC CCGTCGAAGA ACCAGGTCCG TCTGTACGAC GGCCGCACGG GTGAAATGTT CGAACGTCGC GTGACGCTTG GCTACATGCA CTACCTGAAG CTGCACCACT TGGTCGACGA CAAGATGCAC GCGCGTTCGA CCGGCCCGTA CTCGCTCGTC ACGCAGCAGC CGCTGGGTGG TAAGGCGCAG TTCGGTGGCC AGCGTTTCGG TGAAATGGAA GTGTGGGCAC TCGAAGCGTA CGGCGCGTCC TACGTGCTGC AGGAAATGCT GACGGTGAAG TCGGACGACG TGAACGGCCG GACCAAGGTC TATGAGAACC TGGTCAAGGG CGATCACGTC ATCGATGCAG GCATGCCGGA ATCCTTCAAC GTGCTCGTGA AGGAAATCCG CTCGCTCGGT ATCGATATCG ATCTCGACCG CAATTAA
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Protein sequence | MQYSFTEKKR IRKSFAKRPI VHQVPFLLAT QLESFSTFLQ ADVPGTQRKP EGLQAAFTSV FPIVSHNGFA RLEFVSYALS SPAFNIKECQ QRGLTYCSAL RAKVRLVILD KESPNKPVVK EVKEQEVYMG EIPLMTPTGS FVINGTERVI VSQLHRSPGV FFEHDKGKTH SSGKLLFSAR IIPYRGSWLD FEFDPKDILY FRVDRRRKMP VTILLKAIGL TPEQILANFF VFDNFTLMDE GAQLEFVPER LRGEVARFDI TDRDGKVIVQ KDKRINAKHI RDLEAAKTKF ISVPEDYLLG RVLAKNVVDG DTGEVIASAN DEVTESVLEK LREAGIKEIQ TLYTNDLDQG PYISSTLRVD ETTDKTAARI AIYRMMRPGE PPTEEAVEAL FNRLFYSEEA YDLSKVGRMK FNRRVGRDEI TGPMTLQDDD ILATIKILVE LRNGKGEVDD IDHLGNRRVR CVGELAENQF RAGLVRVERA VKERLGQAES ENLMPHDLIN SKPISSAIRE FFGSSQLSQF MDQTNPLSEI THKRRVSALG PGGLTRERAG FEVRDVHPTH YGRVCPIETP EGPNIGLINS LALYAHLNEY GFLETPYRKV VDSKVTDQID YLSAIEEGRY MIAQANAAID ENGQLVDELV SSREAGETMM VTPDRIQYMD VAPSQIVSVA ASLIPFLEHD DANRALMGSN MQRQAVPCLR PEKPVVGTGI ERTCAVDSGT TVQAFRGGVV DYVDAGRIVI RVNDDEAVAG EVGVDIYNLI KYTRSNQNTN INQRPIVKMG DKVSRGDVLA DGASTDLGEL ALGQNMLIAF MPWNGYNFED SILISEKVVA DDRYTSIHIE ELNVVARDTK LGPEEITRDI SNLAEVQLGR LDESGIVYIG AEVEAGDVLV GKVTPKGETQ LTPEEKLLRA IFGEKASDVK DTSLRVPSGM SGTVIDVQVF TREGIQRDKR AQQIIDDELK RYRLDLNDQL RIVEGDAFQR LARMLVGKVA NGGPKKLAKG TKIDQAYLED LDHYHWFDIR LADDEAAAQL EAIKNSIEEK RHQFDLAFEE KRKKLTQGDE LPPGVLKMVK VYLAVKRRLQ PGDKMAGRHG NKGVVSKIVP IEDMPYMADG RPADVVLNPL GVPSRMNVGQ VLEVHLGWAA KGLGWRIGEM LQRQAKIEEM RSFLTKIYND SGRKEDLESF TDDEILELAK NLREGVPFAT PVFDGATEEE MGKMLDLAFP DDIAEQLGMN PSKNQVRLYD GRTGEMFERR VTLGYMHYLK LHHLVDDKMH ARSTGPYSLV TQQPLGGKAQ FGGQRFGEME VWALEAYGAS YVLQEMLTVK SDDVNGRTKV YENLVKGDHV IDAGMPESFN VLVKEIRSLG IDIDLDRN
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