Gene Bamb_0207 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_0207 
Symbol 
ID4309169 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008390 
Strand
Start bp240397 
End bp242964 
Gene Length2568 bp 
Protein Length855 aa 
Translation table11 
GC content60% 
IMG OID638147986 
ProductRhs element Vgr protein 
Protein accessionYP_772101 
Protein GI115350262 
COG category[S] Function unknown 
COG ID[COG3501] Uncharacterized protein conserved in bacteria
[COG4253] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.118716 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAATAA ATAAGTCAAT AACGAAAAGT AATAAAGAGA TGGAAATGGA TGCGCAAGAC 
ATCGTGAGGG CGGTTCAAGG GGGGCTGCTT CAGCAAGACC GCCTGCTGAA ACTGGATACC
CCGCTCGGGG ACAGTGTATT GCTCCCTCAA CGCACTGTCG GCTGGTCCCG GCTCGGCCGG
CATTTCGACT TCACAGTCGA TGTCCTGTCA ACGCGCAGCG ACCTCAAGCT GAAAAAACTG
ATCGGGCAAC CCGTTACGCT GTGGATCCAG CAGGCAGATC AGTCCTATCT TCCCCGAAAC
GGTTACGTCT ATGCCGTGCG AAGACTGGGA TCGGAAGGGG GCTTGACCAG TTACCAGATC
TGTTTTGCGT CATGGATGCA TTTCCTGAAG TTTCGCCGTG ATCAGCGCAT CTGGCAGGAC
AAGCCCGTCG ACGAAATCCT CAGGGACGTG TTCAACGCGC ATTCGCCCGC GAAAGGCCGA
TTCGATTTTG CACTCTCAAA ACCGCTTCCG CCCCGATCGT ACTGTACGCA GTATGAGGAC
GATTGGAATT TCGTCCACCG GTTGATGGAA GAAGAAGGCC TGTTCGGCAT CTGGAAGCAG
GCCGACGACG GCAAATCCCA TACCCTGACC ATCACGGATC ACCTGGATAC GTGCGATCCG
CTCGCCGCGC GATCAGTTCA ATTCTCGAGA TACGGCACGA ACAGCGAGGT CGATGCGTTG
GTTCACTGGT CCGGCCTGCG AACCCTCCAT AGCGCCATCC TGACCACGCG AACATTCGAC
TATAAGTATC CCGCGCCGCT CGCCAATCCG AAGGGCACCA ATATTCCGAC GGTGTCGCAG
GAGTTGCCGG AACAGTTGGA GATGTATGAG TACACCGGCC CCTATACTTA TCTCGATCAG
GAACGTGGCG ATCACCTTTC CAAGGTGCGC ATGGAGGAAT GGGAATCACG CGCAAAGCGG
TTTTATGGCG CGGGCGGGTT GCGTGGCGTC GACGCCGGGC GGTGGTTTGA GCTCACCGGG
CACCCGGAAC ACGACCGCGA GTCAGGTGAG CGCAGCGAAT TCGCCGTCAT CGAAGTAGCC
TGGCTGATCG AGAACAACTT GCCGGGATCG AGCCATCACG GCGATCTACC GCATAGTCTG
ACTGGGAGAT TGGCTGAGGC GAAAGCAAAC TTCGGAGGGC AGCCGGCCTC CGGCTCCACG
CATTTCGATG GCTCCGAGGG CTTCTTCCTC GTCGAGATCG AAGCGCAGCG CAAATCCGTG
CCCTTCCGCA GCCCGTTCGA ACACCGTAAG CCCGTCATGC AGATGCAGAC GGCGACCGTG
GTTGGTCCGC AAGGTCGACG CATTTATACC GACGAACTCG GCCGCGTCAA GGTGCAGTTT
CACTGGGATC GGATCGGGCA ACGCGACGAG CGCAGTTCCT GTTGGGTCCG CGTGAGCCAT
CCATGGGCGG GCGAGGGATT TGGGATGATC CATGTCCCTC GCATTGGTGA CGAAGTTGTC
GTGTCATTCC TGGATGGCGC GCCGGACCGC CCGATCATTA CCGGGCGCGT GCCGAACGGC
ACCAACTTTG TGCAGTGGAA GCTCCCGGAT AACCAGACGC TATCAGGTCT GCGCTCTCGT
GACCTCGAGG GCACGGCGGC AAATCAGGTC GTGGCCGACG ACACGCCGGG GAAACTGCAG
GTACAAGTTT CGAGCGACCA CGAGCAGTCG CGCCTTGTCG TCGGGTACAA CACTCGCATT
GACGGCAACG CGGGGCGAGC CGAAGCGCGC GGTACCGGCT GGGAACTGGC AACGGATTCC
TGGGGCGTAT TGCGCGCCAA TCGCGGCATG CTGGTGACGA CCGAGACGCG CGCGGGCGCG
ACCGCGGCGG CGAAAGACAT GAGCGAGACT GTCGATCGAC TCGGGAAAGC GCAGCAACTG
CATGATGCAC TCACGAAGAT CGCGCAGCAG AGCGAGGCAC AGGATGCTGA CGGCCATCAG
GCCGATCTCG TCAACACCAT TGCGGCACAG AACGAACAAA TTCGCGGCTC TGGCGCGAGC
GGCAGCAACA CGTTCCCGGA GTTGTCGGAG CCGCACTTGG TGATCGACGG CAAGGCCGGC
GTCGAGATCA CAACGCCAGC GACCGTGCAT GTGGCGTCCC AGCAGGCCGC GATCACGACG
GAAGGCCATA TTGGTATTGC CAGTGGCCGC AGCTTCTTCG CGACGGTGCG CGACACCCTT
CGCCTGTTCG CGCAGACCGG CCCGATGCAC TTGGTGTCGG CGGCAGGCGA CATCGTATTG
AACGCGCTGA CGAAGTCCAT CGTGGCGCGG GCGCAGAAGC AGATCCTGCT GGAAAGCGAG
GAGATCCTGC TGCGGGCGCA CAAATTCCGC GTCGAGGTCA ACGGCAGTTT CTTGAACATG
GACGCGAGCG GCGTGGTGAG CGGCACAACG GGCAAATTTA CTGCGTTTGC GGCGACGCAC
GACCTGCCGG GCCCGAAGGA CCAGATGGTT GATCTGTCGC CGAAGAAGAT CTGTGTCGAA
TGCATGCTTA AGGCGGCCCG GGGCGGAGCA GCCCTGGTGC CCCGTTAA
 
Protein sequence
MTINKSITKS NKEMEMDAQD IVRAVQGGLL QQDRLLKLDT PLGDSVLLPQ RTVGWSRLGR 
HFDFTVDVLS TRSDLKLKKL IGQPVTLWIQ QADQSYLPRN GYVYAVRRLG SEGGLTSYQI
CFASWMHFLK FRRDQRIWQD KPVDEILRDV FNAHSPAKGR FDFALSKPLP PRSYCTQYED
DWNFVHRLME EEGLFGIWKQ ADDGKSHTLT ITDHLDTCDP LAARSVQFSR YGTNSEVDAL
VHWSGLRTLH SAILTTRTFD YKYPAPLANP KGTNIPTVSQ ELPEQLEMYE YTGPYTYLDQ
ERGDHLSKVR MEEWESRAKR FYGAGGLRGV DAGRWFELTG HPEHDRESGE RSEFAVIEVA
WLIENNLPGS SHHGDLPHSL TGRLAEAKAN FGGQPASGST HFDGSEGFFL VEIEAQRKSV
PFRSPFEHRK PVMQMQTATV VGPQGRRIYT DELGRVKVQF HWDRIGQRDE RSSCWVRVSH
PWAGEGFGMI HVPRIGDEVV VSFLDGAPDR PIITGRVPNG TNFVQWKLPD NQTLSGLRSR
DLEGTAANQV VADDTPGKLQ VQVSSDHEQS RLVVGYNTRI DGNAGRAEAR GTGWELATDS
WGVLRANRGM LVTTETRAGA TAAAKDMSET VDRLGKAQQL HDALTKIAQQ SEAQDADGHQ
ADLVNTIAAQ NEQIRGSGAS GSNTFPELSE PHLVIDGKAG VEITTPATVH VASQQAAITT
EGHIGIASGR SFFATVRDTL RLFAQTGPMH LVSAAGDIVL NALTKSIVAR AQKQILLESE
EILLRAHKFR VEVNGSFLNM DASGVVSGTT GKFTAFAATH DLPGPKDQMV DLSPKKICVE
CMLKAARGGA ALVPR