Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_0207 |
Symbol | |
ID | 4309169 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008390 |
Strand | + |
Start bp | 240397 |
End bp | 242964 |
Gene Length | 2568 bp |
Protein Length | 855 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 638147986 |
Product | Rhs element Vgr protein |
Protein accession | YP_772101 |
Protein GI | 115350262 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria [COG4253] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.118716 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAATAA ATAAGTCAAT AACGAAAAGT AATAAAGAGA TGGAAATGGA TGCGCAAGAC ATCGTGAGGG CGGTTCAAGG GGGGCTGCTT CAGCAAGACC GCCTGCTGAA ACTGGATACC CCGCTCGGGG ACAGTGTATT GCTCCCTCAA CGCACTGTCG GCTGGTCCCG GCTCGGCCGG CATTTCGACT TCACAGTCGA TGTCCTGTCA ACGCGCAGCG ACCTCAAGCT GAAAAAACTG ATCGGGCAAC CCGTTACGCT GTGGATCCAG CAGGCAGATC AGTCCTATCT TCCCCGAAAC GGTTACGTCT ATGCCGTGCG AAGACTGGGA TCGGAAGGGG GCTTGACCAG TTACCAGATC TGTTTTGCGT CATGGATGCA TTTCCTGAAG TTTCGCCGTG ATCAGCGCAT CTGGCAGGAC AAGCCCGTCG ACGAAATCCT CAGGGACGTG TTCAACGCGC ATTCGCCCGC GAAAGGCCGA TTCGATTTTG CACTCTCAAA ACCGCTTCCG CCCCGATCGT ACTGTACGCA GTATGAGGAC GATTGGAATT TCGTCCACCG GTTGATGGAA GAAGAAGGCC TGTTCGGCAT CTGGAAGCAG GCCGACGACG GCAAATCCCA TACCCTGACC ATCACGGATC ACCTGGATAC GTGCGATCCG CTCGCCGCGC GATCAGTTCA ATTCTCGAGA TACGGCACGA ACAGCGAGGT CGATGCGTTG GTTCACTGGT CCGGCCTGCG AACCCTCCAT AGCGCCATCC TGACCACGCG AACATTCGAC TATAAGTATC CCGCGCCGCT CGCCAATCCG AAGGGCACCA ATATTCCGAC GGTGTCGCAG GAGTTGCCGG AACAGTTGGA GATGTATGAG TACACCGGCC CCTATACTTA TCTCGATCAG GAACGTGGCG ATCACCTTTC CAAGGTGCGC ATGGAGGAAT GGGAATCACG CGCAAAGCGG TTTTATGGCG CGGGCGGGTT GCGTGGCGTC GACGCCGGGC GGTGGTTTGA GCTCACCGGG CACCCGGAAC ACGACCGCGA GTCAGGTGAG CGCAGCGAAT TCGCCGTCAT CGAAGTAGCC TGGCTGATCG AGAACAACTT GCCGGGATCG AGCCATCACG GCGATCTACC GCATAGTCTG ACTGGGAGAT TGGCTGAGGC GAAAGCAAAC TTCGGAGGGC AGCCGGCCTC CGGCTCCACG CATTTCGATG GCTCCGAGGG CTTCTTCCTC GTCGAGATCG AAGCGCAGCG CAAATCCGTG CCCTTCCGCA GCCCGTTCGA ACACCGTAAG CCCGTCATGC AGATGCAGAC GGCGACCGTG GTTGGTCCGC AAGGTCGACG CATTTATACC GACGAACTCG GCCGCGTCAA GGTGCAGTTT CACTGGGATC GGATCGGGCA ACGCGACGAG CGCAGTTCCT GTTGGGTCCG CGTGAGCCAT CCATGGGCGG GCGAGGGATT TGGGATGATC CATGTCCCTC GCATTGGTGA CGAAGTTGTC GTGTCATTCC TGGATGGCGC GCCGGACCGC CCGATCATTA CCGGGCGCGT GCCGAACGGC ACCAACTTTG TGCAGTGGAA GCTCCCGGAT AACCAGACGC TATCAGGTCT GCGCTCTCGT GACCTCGAGG GCACGGCGGC AAATCAGGTC GTGGCCGACG ACACGCCGGG GAAACTGCAG GTACAAGTTT CGAGCGACCA CGAGCAGTCG CGCCTTGTCG TCGGGTACAA CACTCGCATT GACGGCAACG CGGGGCGAGC CGAAGCGCGC GGTACCGGCT GGGAACTGGC AACGGATTCC TGGGGCGTAT TGCGCGCCAA TCGCGGCATG CTGGTGACGA CCGAGACGCG CGCGGGCGCG ACCGCGGCGG CGAAAGACAT GAGCGAGACT GTCGATCGAC TCGGGAAAGC GCAGCAACTG CATGATGCAC TCACGAAGAT CGCGCAGCAG AGCGAGGCAC AGGATGCTGA CGGCCATCAG GCCGATCTCG TCAACACCAT TGCGGCACAG AACGAACAAA TTCGCGGCTC TGGCGCGAGC GGCAGCAACA CGTTCCCGGA GTTGTCGGAG CCGCACTTGG TGATCGACGG CAAGGCCGGC GTCGAGATCA CAACGCCAGC GACCGTGCAT GTGGCGTCCC AGCAGGCCGC GATCACGACG GAAGGCCATA TTGGTATTGC CAGTGGCCGC AGCTTCTTCG CGACGGTGCG CGACACCCTT CGCCTGTTCG CGCAGACCGG CCCGATGCAC TTGGTGTCGG CGGCAGGCGA CATCGTATTG AACGCGCTGA CGAAGTCCAT CGTGGCGCGG GCGCAGAAGC AGATCCTGCT GGAAAGCGAG GAGATCCTGC TGCGGGCGCA CAAATTCCGC GTCGAGGTCA ACGGCAGTTT CTTGAACATG GACGCGAGCG GCGTGGTGAG CGGCACAACG GGCAAATTTA CTGCGTTTGC GGCGACGCAC GACCTGCCGG GCCCGAAGGA CCAGATGGTT GATCTGTCGC CGAAGAAGAT CTGTGTCGAA TGCATGCTTA AGGCGGCCCG GGGCGGAGCA GCCCTGGTGC CCCGTTAA
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Protein sequence | MTINKSITKS NKEMEMDAQD IVRAVQGGLL QQDRLLKLDT PLGDSVLLPQ RTVGWSRLGR HFDFTVDVLS TRSDLKLKKL IGQPVTLWIQ QADQSYLPRN GYVYAVRRLG SEGGLTSYQI CFASWMHFLK FRRDQRIWQD KPVDEILRDV FNAHSPAKGR FDFALSKPLP PRSYCTQYED DWNFVHRLME EEGLFGIWKQ ADDGKSHTLT ITDHLDTCDP LAARSVQFSR YGTNSEVDAL VHWSGLRTLH SAILTTRTFD YKYPAPLANP KGTNIPTVSQ ELPEQLEMYE YTGPYTYLDQ ERGDHLSKVR MEEWESRAKR FYGAGGLRGV DAGRWFELTG HPEHDRESGE RSEFAVIEVA WLIENNLPGS SHHGDLPHSL TGRLAEAKAN FGGQPASGST HFDGSEGFFL VEIEAQRKSV PFRSPFEHRK PVMQMQTATV VGPQGRRIYT DELGRVKVQF HWDRIGQRDE RSSCWVRVSH PWAGEGFGMI HVPRIGDEVV VSFLDGAPDR PIITGRVPNG TNFVQWKLPD NQTLSGLRSR DLEGTAANQV VADDTPGKLQ VQVSSDHEQS RLVVGYNTRI DGNAGRAEAR GTGWELATDS WGVLRANRGM LVTTETRAGA TAAAKDMSET VDRLGKAQQL HDALTKIAQQ SEAQDADGHQ ADLVNTIAAQ NEQIRGSGAS GSNTFPELSE PHLVIDGKAG VEITTPATVH VASQQAAITT EGHIGIASGR SFFATVRDTL RLFAQTGPMH LVSAAGDIVL NALTKSIVAR AQKQILLESE EILLRAHKFR VEVNGSFLNM DASGVVSGTT GKFTAFAATH DLPGPKDQMV DLSPKKICVE CMLKAARGGA ALVPR
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