Gene Bamb_0160 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_0160 
Symbol 
ID4308564 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008390 
Strand
Start bp192601 
End bp193476 
Gene Length876 bp 
Protein Length291 aa 
Translation table11 
GC content67% 
IMG OID638147939 
ProductCof-like hydrolase 
Protein accessionYP_772055 
Protein GI115350216 
COG category[R] General function prediction only 
COG ID[COG0561] Predicted hydrolases of the HAD superfamily 
TIGRFAM ID[TIGR00099] Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily
[TIGR01484] HAD-superfamily hydrolase, subfamily IIB 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.53218 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGGTTC CGCAGCATCC TGCGCGCCAT TTCCCCGCTC CCATGTACAA AGTCATCGCC 
ACCGATCTCG ACGGCACTCT GCTGAACAGC GACCATCAGC TCGATCCGTA CACGATCGAG
ACCGTCCGCC GGCTCGATCG CGACGGCCTG CAGTTCGTGA TCGCGACAGG CCGCCATTAC
GCGGACGTCG CCGGCATCCG CGACGTGCTG GGCATCCGGC CGTACCTGAT CACGTCGAAC
GGTGCGCGCG TGCATGCGCC GGACGACACG GCGATCCATG CGCAGGACAT CGACCCCGCG
ATCGTCCGCG GCCTCGTGCA GCCGGGCGTG ACCGGCGCGC ACGGGCGCGT GATCGTCAAC
CTGTTCACCG ACCGCGGCTG GCTGATCGAC CGCGAAGCGC CGCACCTGCT CGAATTCCAC
CAGGATTCGG GTTTCCGGTA CGACGTGATC GACATGGCCG CGCACGACGG CGCGGACATC
GCGAAGGTGC TGTACATCGG CGAGCCGGCC GATCTGGCGG TGGTCGCCGA GCAGATGCGC
GTGCAGTTCG GCGATGCGCT GTACGTCACG TACTCGCTGC CCGACTGCCT CGAAGTGATG
ACCGCGAACG TGTCGAAGGG CCGCGCACTG CGCGCGGTGC TCGCGCGGCT CGGCGTCGAT
ACCGGCCACT GCATCGCGTT CGGCGACAAC ATGAACGACA TCGACCTGCT CGAAACGGCC
GGTCACGCGT TCATGATGAA CAACGCGAAT CCCGACCTGA TCGCGCAGCT GCCGCACATC
CCGCGGATCG GCAACAACTT CGACGCGGGC GTCGCCCGCC ACCTGCGCAC GCTGTTCTCG
CTCGAGGACA CCGTCGACGG CGTCGCCGCT TCCTGA
 
Protein sequence
MAVPQHPARH FPAPMYKVIA TDLDGTLLNS DHQLDPYTIE TVRRLDRDGL QFVIATGRHY 
ADVAGIRDVL GIRPYLITSN GARVHAPDDT AIHAQDIDPA IVRGLVQPGV TGAHGRVIVN
LFTDRGWLID REAPHLLEFH QDSGFRYDVI DMAAHDGADI AKVLYIGEPA DLAVVAEQMR
VQFGDALYVT YSLPDCLEVM TANVSKGRAL RAVLARLGVD TGHCIAFGDN MNDIDLLETA
GHAFMMNNAN PDLIAQLPHI PRIGNNFDAG VARHLRTLFS LEDTVDGVAA S