Gene Bamb_0103 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_0103 
SymbolputA 
ID4311231 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008390 
Strand
Start bp116822 
End bp120754 
Gene Length3933 bp 
Protein Length1310 aa 
Translation table11 
GC content70% 
IMG OID638147881 
Producttrifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 
Protein accessionYP_771998 
Protein GI115350159 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase 
TIGRFAM ID[TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAAGCA CGACTCTCGG CGTCAAAGTC GACGACCTTC TCCGCTCGCG CCTGAAAGAC 
GCGGCCGCGC GTCTCGAGCG CACTCCCCAC TGGCTGATCA AGCAGGCGAT CTTCGCGTAT
CTCGAGCGGA TCGAGCACGG CCAGTTGCCG CCCGAGCTGT CGGGCCACAG CGGCGTGACG
GAGCTCGCCG ACGGTCAGGC GACGGACAGC GACGACGACA ACTCGCCGCA TCCGTTCCTC
GAGTTCGCGC AGAACGTGCA GCCGCAATCG GTGCTGCGCG CGGCGATCAC GGCCGCGTAT
CGCCGACCCG AGCCGGAATG CGTGCCGTTC CTGCTGGGCC AGGCGCGCCT GCCGGCCAAC
TTGCAAGCGG ACGCGCAGGC GCTCGCGACG ACGCTCGTCG AGGCGCTGCG CGAGAAGAAC
TCGGGCGGCG GCGTCGAAGG GCTGATCCAC GAGTTCTCGC TGTCGAGCCA GGAAGGCGTC
GCGCTGATGT GTCTCGCCGA AGCGCTGCTG CGCATCCCCG ATCGCGCGAC GCGCGATGCG
CTGATCCGCG ACAAGATCAG CAAGGGCGAC TGGCGCTCGC ACGTCGGCCA CGCGCCGTCG
CTGTTCGTGA ACGCGGCGAC CTGGGGGCTG ATGATCACCG GCAAGCTCGT GACGACCAAC
AGCGAAGCGG GCCTGTCGTC GGCGCTCACG CGCCTGATCG GCCGCGGCGG CGAGCCGCTG
ATCCGCAAGG GCGTCGACAT GGCGATGCGC CTGATGGGCG AGCAGTTCGT CACCGGCGAG
ACGATTTCCG AGGCGCTCGC GAACAGCCGC AAGTACGAAG CGCGCGGCTT CCGCTACTCG
TACGACATGC TCGGCGAAGC GGCGACGACC GAAGAGGACG CGCTGCGCTA CTACGCGTCG
TACGAGCAGG CGATCCACGC GATCGGCAAG GCGGCCGGCG GCCGCGGCAT CTACGAAGGC
CCGGGCATCT CGATCAAGCT GTCGGCGCTG CACGCGCGCT ACGCGCGCTC GCAGCAGGAC
CGCACGATGA GCGAGCTGCT GCCGCGCGTG CGCGCGCTGG CGCTGCTCGC GCGTCGCTAT
GACATCGGCC TGAACATCGA CGCGGAAGAA GCCGACCGTC TCGAACTGTC GCTCGACCTG
CTCGAGGCGC TGTGCTTCGA TCCGGAGCTC GCGGGCTGGA ACGGCATCGG CTTCGTCGTG
CAGGGATACC AGAAGCGCTG CCCGTTCGTG ATCGACTACC TGATCGATCT CGCGCGCCGC
AGCCGTCACC GCCTGATGAT CCGCCTGGTC AAGGGCGCGT ACTGGGACAG CGAAATCAAG
CGCGCGCAGG TCGACGGCCT CGAAGGCTAT CCGGTCTACA CGCGCAAGAT CTACACGGAC
GTGTCCTACC TCGCGTGCGC GAAGAAGCTG CTCGCGGCGC CGGACGCCGT CTACCCGCAG
TTCGCGACGC ACAACGCGTA CACGCTGGCC GCGATCTATC ACCTCGCCGG CCACAACTAC
TACCCGGGCC AGTACGAATT CCAGTGCCTG CACGGGATGG GCGAGCCGCT GTACGAGGAA
GTCACGGGCC GCGACAAGCT GAACCGCCCG TGCCGCGTGT ACGCGCCGGT CGGCACGCAT
GAAACGCTGC TCGCGTACCT GGTGCGCCGC CTGCTGGAGA ACGGCGCGAA CACGTCGTTC
GTGAACCGCA TCGCCGATAA GACCGTGTCG GTGAAGGAAC TGGTCGCCGA TCCGGTCGAC
GAGGCGTCGA AGGTCGTGCC GCTCGGCGCG CCGCACGCGA AGATCCCGCT GCCGCGCCAC
CTGTACGGCG ACGAGCGTCC CAACTCGATG GGCCTCGACC TGTCGAACGA ACACCGCCTC
GCGTCGCTGT CGTCCGCGCT GCTCGCGAGT GCGCATCATC CGTGGCGCGC GGCGCCGATG
CTCGCCGACG ACGCGCTCGC CGACGCACCG GCGCGCGACG TGCGCAACCC GGCCGACCTG
CGCGACGTGG TCGGCACGGT CAGCGAAGCG ACGGCCGAAC ACGTGAGCGC GGCGCTCGCG
CATGCGGTGG CTGCCGCGCC GATCTGGCAG GCGACGCCGG TCGATGCGCG CGCCGACTGC
CTGGTGCGCG CGGCCGACCT GCTCGAAGCG CAGATGCACA CGCTAATGGG TCTGATCGTG
CGCGAGGCCG GCAAGTCGCT GCCGAACGCG ATCGCCGAAA TCCGCGAGGC CGTCGACTTC
CTGCGCTACT ACGCGGCGCA GATCCGCGAC GAATTCTCGA ACGACACGCA CCGTCCGCTC
GGCCCCGTGG TCTGCATCAG CCCGTGGAAC TTCCCGCTCG CGATCTTCAT GGGCCAGGTG
GCCGCTGCAC TGGCAGCCGG CAATACGGTG CTCGCGAAGC CGGCCGAACA GACGCCGCTG
ATCGCCGCAC AAGCCGTGCG CCTGCTGCGC GAGGCCGGCG TGCCGGCCGG CGCGGTGCAG
TTGCTGCCGG GCACCGGCGA GACCGTCGGC GCGGCGCTGG TCGCCGATTC GCGCACGCGC
GCGGTGATGT TCACCGGCTC GACCGAAGTG GCGCGCCTGA TCAACAAGAC GCTGTCCGCG
CGCCTCGACC CGGACGGCAA GCCGATTCCG CTGATCGCGG AAACGGGCGG CCAGAACGCG
ATGATCGTCG ACTCGTCGGC GCTCGCGGAG CAGGTGGTCG CGGACGTGCT GCAGTCGTCG
TTCGACTCGG CCGGTCAACG GTGTTCGGCG CTGCGCGTTC TGTGTCTGCA GGACGACGTC
GCGGACCGCA CGCTGACGAT GCTCAAGGGC GCGATGCACG AGCTGGCGCT CGGCAACCCG
GACCGTTTGT CGACCGACGT CGGCCCGGTG ATCGACGCCG AAGCGAAGCA GACGATCGAC
ACGCACGTCG CGACGATGAC GGACAAGGGC CACACGGTCA CGCAGCTGCC GGCGCCGGAA
GCCTGTGCGC ACGGTACGTT CGTGCCGCCG ACGCTGATCG AGATCGGCAG CATCGACGAG
CTCAAGCGCG AGGTGTTCGG CCCCGTGCTG CACGTCGTGC GCTACCGCCG CAATCAACTC
GACAAGCTGC TCGAGCAGAT CCGCGCGACC GGTTACGGGC TGACGCTCGG CATCCATACG
CGGATCGACG AGACGATCGC GCACGTGATC TCGAACGCGC ACGTCGGCAA CATCTACGTG
AACCGCAACG TGATCGGCGC GGTGGTCGGC GTGCAGCCGT TCGGCGGCGA AGGGCTATCG
GGTACGGGCC CGAAGGCCGG CGGCGCGCTG TACCTGCAGC GCCTGCTCGC GACGCGTCCG
TCGGGCCTGC CGCGCTCGCT CGCGCAGATG CTGATCGCGG ACGGCGCGGT CGAAGGCGAC
TCGCGCGGCA ACCCGGCGGC GGCGCTCACC GCGCTGCGCG ACTGGCTGAT CGAGCAGCGC
GAACCGGCGC TGGCCGCGCG CTGCGACGGC TATCTGGCGC AGGTGCCGGC CGGCGCGACC
GCGGTGCTGA CCGGCCCGAC GGGCGAGCGA AACACGTATA CACTCGGCCC GCGCGGCACG
GTGCTGTGCG TCGCGGCGAC GCCGAGCGGT GCGCGTGCGC AGTTCGCGGC GGTGCTGGCG
ACGGGCAACC GCGCATTGTT CGCCGGTGCG GCGGGCGAGG CGCTGGTCGC GGCGCTGCCG
GCCGCGCTGA AGGCGCATGC GGCCGTGCGC AAGCAGCCCG ACGCGCCGTT CGACGCGGTG
CTGTTCGAAG GCGACAGCGA CGAACTGCAG ACGCTCGTGA AGGACGTCGC GCAGCGGCCG
GGCCCGATCG TGTCGGTGCA GGGCGTGTCG GCGGGCGCGT TCGAGAACGG CGACGCGGAA
GACTACGCGC TCGAGCGGCT GCTGACCGAG CGCTCGGTCA GCGTGAACAC GGCCGCGGCG
GGCGGCAATG CGAATTTGAT GACGATCGGC TGA
 
Protein sequence
MASTTLGVKV DDLLRSRLKD AAARLERTPH WLIKQAIFAY LERIEHGQLP PELSGHSGVT 
ELADGQATDS DDDNSPHPFL EFAQNVQPQS VLRAAITAAY RRPEPECVPF LLGQARLPAN
LQADAQALAT TLVEALREKN SGGGVEGLIH EFSLSSQEGV ALMCLAEALL RIPDRATRDA
LIRDKISKGD WRSHVGHAPS LFVNAATWGL MITGKLVTTN SEAGLSSALT RLIGRGGEPL
IRKGVDMAMR LMGEQFVTGE TISEALANSR KYEARGFRYS YDMLGEAATT EEDALRYYAS
YEQAIHAIGK AAGGRGIYEG PGISIKLSAL HARYARSQQD RTMSELLPRV RALALLARRY
DIGLNIDAEE ADRLELSLDL LEALCFDPEL AGWNGIGFVV QGYQKRCPFV IDYLIDLARR
SRHRLMIRLV KGAYWDSEIK RAQVDGLEGY PVYTRKIYTD VSYLACAKKL LAAPDAVYPQ
FATHNAYTLA AIYHLAGHNY YPGQYEFQCL HGMGEPLYEE VTGRDKLNRP CRVYAPVGTH
ETLLAYLVRR LLENGANTSF VNRIADKTVS VKELVADPVD EASKVVPLGA PHAKIPLPRH
LYGDERPNSM GLDLSNEHRL ASLSSALLAS AHHPWRAAPM LADDALADAP ARDVRNPADL
RDVVGTVSEA TAEHVSAALA HAVAAAPIWQ ATPVDARADC LVRAADLLEA QMHTLMGLIV
REAGKSLPNA IAEIREAVDF LRYYAAQIRD EFSNDTHRPL GPVVCISPWN FPLAIFMGQV
AAALAAGNTV LAKPAEQTPL IAAQAVRLLR EAGVPAGAVQ LLPGTGETVG AALVADSRTR
AVMFTGSTEV ARLINKTLSA RLDPDGKPIP LIAETGGQNA MIVDSSALAE QVVADVLQSS
FDSAGQRCSA LRVLCLQDDV ADRTLTMLKG AMHELALGNP DRLSTDVGPV IDAEAKQTID
THVATMTDKG HTVTQLPAPE ACAHGTFVPP TLIEIGSIDE LKREVFGPVL HVVRYRRNQL
DKLLEQIRAT GYGLTLGIHT RIDETIAHVI SNAHVGNIYV NRNVIGAVVG VQPFGGEGLS
GTGPKAGGAL YLQRLLATRP SGLPRSLAQM LIADGAVEGD SRGNPAAALT ALRDWLIEQR
EPALAARCDG YLAQVPAGAT AVLTGPTGER NTYTLGPRGT VLCVAATPSG ARAQFAAVLA
TGNRALFAGA AGEALVAALP AALKAHAAVR KQPDAPFDAV LFEGDSDELQ TLVKDVAQRP
GPIVSVQGVS AGAFENGDAE DYALERLLTE RSVSVNTAAA GGNANLMTIG