| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_0101 |
|---|
| Symbol | hemE |
|---|
| ID | 4311229 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 112583 |
|---|
| End bp | 113761 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638147879 |
|---|
| Product | uroporphyrinogen decarboxylase |
|---|
| Protein accession | YP_771996 |
|---|
| Protein GI | 115350157 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
|---|
| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCCA TCGCATCGGC ATACGCGGCG GCACGGCCCC GCTCCGGTAA AATGCCGCTT
TGCCTTCGCA TCGTCGCTCC TACCGTGGCC CATAACCTGC TCAACGACAC CTTCCTGCGT
GCGCTTCTGC GCGAGCCGAC CGACTACACG CCGATCTGGC TGATGCGCCA GGCCGGCCGC
TACCTGCCCG AATACAACGC GACGCGCGCA CGCGCCGGCA GCTTCCTCGG CCTCGCGAAG
AATCCCGACT ACGCGACCGA GGTGACGCTG CAGCCGCTCG AGCGCTTCCC GCTCGACGCC
GCGATCCTGT TCTCGGACAT CCTGACGATT CCCGACGCAA TGGGTCTCGG CCTCGACTTC
CAGGTCGGCG AAGGGCCGAA GTTCGCGCAT CCGGTGCGCA CCGAGGCCGA CGTCGCGAAG
CTCGCGGTGC CGGACATCGA AGCGACGCTC GGCTACGTGA CGGGCGCCGT GCGCGAGATC
CGCCGCGCGC TGACCGACGG CCAGGGCCGC CAGCGCGTGC CGCTGATCGG CTTCTCGGGC
AGCCCGTGGA CGCTCGCGTG CTACATGGTC GAAGGCGGCG GGTCGGACGA TTTCCGCACG
GTGAAGTCGA TGGCGTATTC GCGCCCCGAC CTGATGCACC GGATCCTCGA CGTGAACGCG
CAGGCCGTGG CCGCGTACCT GAACGCGCAG ATCGAAGCCG GCGCGCAGGC CGTGATGATC
TTCGATACGT GGGGCGGCGC GCTGGCGGAC GGCGCGTACC AGCGCTTCTC GCTCGACTAC
ATCCGCCGCG TGGTCGGCCA GCTCAAGCGC GAGCACGACG GCGAGCGCGT GCCGGTGATC
ACGTTCACGA AGGGCGGCGG GCTGTGGCTC GAGGAAATCG CGGCGACCGG CGTCGACGCG
GTCGGGCTCG ACTGGACGGT GAACCTCGGC GCCGCGCGCG AGCGCGTCGC GGGGCGCGTC
GCGCTGCAGG GCAACCTCGA CCCGACGATC CTGTTTGCAC CGCCGGCCGC GGTGCGCGAG
CAGGCGCGCG CGGTACTCGA CAGCTACGGC AATCATCCGG GCCACGTATT CAACCTCGGC
CACGGCATTT CGCAGTTCAC GTCGCCGGAT CACGTCGCCG AACTCGTCGA CGAAGTGCAT
AGCCACAGCC GCAAGATCCT TAGCGGAGCG GCGGTCTGA
|
|---|
| Protein sequence | MAAIASAYAA ARPRSGKMPL CLRIVAPTVA HNLLNDTFLR ALLREPTDYT PIWLMRQAGR
YLPEYNATRA RAGSFLGLAK NPDYATEVTL QPLERFPLDA AILFSDILTI PDAMGLGLDF
QVGEGPKFAH PVRTEADVAK LAVPDIEATL GYVTGAVREI RRALTDGQGR QRVPLIGFSG
SPWTLACYMV EGGGSDDFRT VKSMAYSRPD LMHRILDVNA QAVAAYLNAQ IEAGAQAVMI
FDTWGGALAD GAYQRFSLDY IRRVVGQLKR EHDGERVPVI TFTKGGGLWL EEIAATGVDA
VGLDWTVNLG AARERVAGRV ALQGNLDPTI LFAPPAAVRE QARAVLDSYG NHPGHVFNLG
HGISQFTSPD HVAELVDEVH SHSRKILSGA AV
|
|---|
| |