Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_0040 |
Symbol | |
ID | 4308708 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008390 |
Strand | + |
Start bp | 49812 |
End bp | 51374 |
Gene Length | 1563 bp |
Protein Length | 520 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 638147818 |
Product | RND efflux system outer membrane lipoprotein |
Protein accession | YP_771935 |
Protein GI | 115350096 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCGTACG CCCCCCTCCC GCGCGCCTTT CGCCCGCTGA GCGCCGCCGT CGCCGTTGCG ACGGCCGTGC TGCTCGCCGG CTGCGCCGTC GGGCCCGACT ATCACCGGCC CGACACGTCG ATCCCCGCCG CCTTCAAGGA AGCGCCGGCC GGCTGGAAGG TCGCGCAGCC GGCCGACCGG GCCGACCGCG GCCCGTGGTG GAGCGTCTAC AACGATCCGC AGCTCGACGC GCTGATCGGC AAGCTCAACG CATCGAACCA GACCATCGCG CAATCGGCCG CCGCGTACCG GCAGGCCCGC GCGCTCGTCG CCGAAGCGCG CGCCGCGTAT TTCCCGACCG TCGGGCTGAC CGCGTCGGGC TCGCGCGCAC GCTCGGGGCG CACGCCCACG TCGTCGGGCG CGTCGGGCTT CGGCAGCAGT TCGTCGATCA GCAACAGCTA CAGCGTCGGT CTCGATGCGA GCTGGGAGCC CGACCTGTGG GGCAAGGTGA GCCGCAGCGT CAGCGCGCAG CGCGCCGGCG AAGCGGCCGC CGCGGCCGAT CTCGCGAATG CGCGGCTGTC GCAGCAAGCG CTGCTCGCGC AGACCTACTT CCAGCTGCGC ACGTCCGATG CGCTGCAGAA ACTGCTCGAC GACACCGTGA AGTCGTACGG CGACTCGCTG AGGCTCACGC AGAATCAGTA CGCGCAGGGC GTCGCCGCGC GCGCGGACGT GATCCAGGCG CAGACGCAGC TGCAGAGCGC GCAGGCCGCG GCGATCGACA ACGGCGTCGC GCGCGCGCAG TACGAGCATG CGATCGCGAC GCTGATCGGC GAGCCGGCAT CGACGTTCTC GCTGCCGCCG AACCCGCTCA CCGCGCAACC GCCGATCACG CCGGTCGACG TGCCGTCCGC GCTGCTCGAG CGGCGGCCGG ACATCGCGGC GGCCGAGCGC CGCGCAGCTT CCGCGAACGA GCAGATCGGC GTGGCGATCG CCGCGTTCTT CCCGACGCTC ACGCTGTCCG CCACCGGCGG CTTCCAGAGC TCGGTGTGGT CGCAATTGTT CACCTTGCCC GCGCGGTTCT GGACGGTCGG CCCGCAACTC GCGGCCACGC TGTTCGACGC CGGCCTGCGC GCCGCGCAGA CCGATGCCGC CCGCGCAACC TACGACCAGG ACGTCGCCGC ATATCGTCTC GCGGTGCTCA CCGCGTTCCA GGACGTCGAG GACAACCTCG CGTCGCAGCG CATCCTCGCG CAGGAAGTCG ACGTGCAGCG GCAGGCCGTC GACAGCGCCG AGCAAGCGCT CGCGATCGTC ACGAACCAGT ACAAGGCGGG CACGGTCGCC TACCTGAACG TGCTGAGCGC GCAGACCACC GCGTTTACCG CGCAGCAGAA GCTCGCGACG ATCGCCGGCC AGCGGATGGT GTCGTCCGTC GGGCTCGTGA AGGCGCTGGG CGGCGGGTGG GATGCGTCGG ACATGGCGCG CGAGACGGGC GACGTGGCGG CGCCGGTGCC GGTGCCGGCG TCCGGTGCGG CGGCGCCGGC CGCGACCTCA CCGTCAGCCG CCGCGCCGCT CGCGCAGAAG TAA
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Protein sequence | MPYAPLPRAF RPLSAAVAVA TAVLLAGCAV GPDYHRPDTS IPAAFKEAPA GWKVAQPADR ADRGPWWSVY NDPQLDALIG KLNASNQTIA QSAAAYRQAR ALVAEARAAY FPTVGLTASG SRARSGRTPT SSGASGFGSS SSISNSYSVG LDASWEPDLW GKVSRSVSAQ RAGEAAAAAD LANARLSQQA LLAQTYFQLR TSDALQKLLD DTVKSYGDSL RLTQNQYAQG VAARADVIQA QTQLQSAQAA AIDNGVARAQ YEHAIATLIG EPASTFSLPP NPLTAQPPIT PVDVPSALLE RRPDIAAAER RAASANEQIG VAIAAFFPTL TLSATGGFQS SVWSQLFTLP ARFWTVGPQL AATLFDAGLR AAQTDAARAT YDQDVAAYRL AVLTAFQDVE DNLASQRILA QEVDVQRQAV DSAEQALAIV TNQYKAGTVA YLNVLSAQTT AFTAQQKLAT IAGQRMVSSV GLVKALGGGW DASDMARETG DVAAPVPVPA SGAAAPAATS PSAAAPLAQK
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