Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_0012 |
Symbol | |
ID | 4309448 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008390 |
Strand | - |
Start bp | 22316 |
End bp | 23197 |
Gene Length | 882 bp |
Protein Length | 293 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 638147790 |
Product | RNA polymerase sigma factor SigJ |
Protein accession | YP_771907 |
Protein GI | 115350068 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.347759 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGAGCG TCGATCCGGC CACGGGCAAT GCCGAAGACC GGGCCGATGC AGCGGCGAGC TTCGACCCGC TGCGTCGCAC GCTGATTCGC GTTGCGTACC GGATGCTCGG TTCCGTCGCG GACGCCGAGG ACATCGTGCA GGAGGCGTTC ATCCGCTGGA TGGACGTCGA TCGCACCGAG GTGCGCGTGC CCGAGGCGTT CCTGCGCCGC ATGGTGATGC GCATGTGCCT CGATCAGTTG AAGTCCGCGC GGCACCAGCG CGAGACCTAT ATCGGCCCGT GGCTGCCCGA GCCGGTCGTC GAGCAAGATG AACAGGAGGA CGTCACCCTG CCGCTGATGC TCGCGCTCGA ACGGCTGTCG CCGCTGGAGC GCGCGGCGTT CCTGCTGCAC GACGTGTTCG GCCTCGAGTT CGACGAGATC GCGACCACGA TCCAGCGCGA CCCGGCCGCA TGTCGGCAGC TTGCCGCGCG CGCACGCACG CATGTGCGCG AGGCGCGGCC GCGGTTTCAT GTCGAGAAGC AGCGCGGGAT CGAGCTGGCC GAGGCGTTCT TCGCGGCGTC GCGCAGCGGC GACATGCGCG CGCTCGGCGC AATGTTGGCC GAAGACGTGA GCCTGCATTC GGACGGCGGC GGCAAGCGCG CGGCCGCGGG CAAGCCGGTG TTCGGCTTCG AACGCGTGAT GAAGGTGCAC GAATACCTGG CCGAGCTGTT CGCCACGCAT GCGTCGAAAC TCGTGCGCGC GGGGTTCATC AACGGGCTGC CGGGGTTCGT CACGCTGGAG GCCGACGGCG AACTGCAGAC GACCGCGCTC GACATCGACG ACGGGAAGAT CGTCGCGATC TATGTCGTAC GCAATCCTGA CAAATTGAAG CATCTGCATT GA
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Protein sequence | MTSVDPATGN AEDRADAAAS FDPLRRTLIR VAYRMLGSVA DAEDIVQEAF IRWMDVDRTE VRVPEAFLRR MVMRMCLDQL KSARHQRETY IGPWLPEPVV EQDEQEDVTL PLMLALERLS PLERAAFLLH DVFGLEFDEI ATTIQRDPAA CRQLAARART HVREARPRFH VEKQRGIELA EAFFAASRSG DMRALGAMLA EDVSLHSDGG GKRAAAGKPV FGFERVMKVH EYLAELFATH ASKLVRAGFI NGLPGFVTLE ADGELQTTAL DIDDGKIVAI YVVRNPDKLK HLH
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