Gene Bamb_0012 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_0012 
Symbol 
ID4309448 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008390 
Strand
Start bp22316 
End bp23197 
Gene Length882 bp 
Protein Length293 aa 
Translation table11 
GC content67% 
IMG OID638147790 
ProductRNA polymerase sigma factor SigJ 
Protein accessionYP_771907 
Protein GI115350068 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.347759 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGAGCG TCGATCCGGC CACGGGCAAT GCCGAAGACC GGGCCGATGC AGCGGCGAGC 
TTCGACCCGC TGCGTCGCAC GCTGATTCGC GTTGCGTACC GGATGCTCGG TTCCGTCGCG
GACGCCGAGG ACATCGTGCA GGAGGCGTTC ATCCGCTGGA TGGACGTCGA TCGCACCGAG
GTGCGCGTGC CCGAGGCGTT CCTGCGCCGC ATGGTGATGC GCATGTGCCT CGATCAGTTG
AAGTCCGCGC GGCACCAGCG CGAGACCTAT ATCGGCCCGT GGCTGCCCGA GCCGGTCGTC
GAGCAAGATG AACAGGAGGA CGTCACCCTG CCGCTGATGC TCGCGCTCGA ACGGCTGTCG
CCGCTGGAGC GCGCGGCGTT CCTGCTGCAC GACGTGTTCG GCCTCGAGTT CGACGAGATC
GCGACCACGA TCCAGCGCGA CCCGGCCGCA TGTCGGCAGC TTGCCGCGCG CGCACGCACG
CATGTGCGCG AGGCGCGGCC GCGGTTTCAT GTCGAGAAGC AGCGCGGGAT CGAGCTGGCC
GAGGCGTTCT TCGCGGCGTC GCGCAGCGGC GACATGCGCG CGCTCGGCGC AATGTTGGCC
GAAGACGTGA GCCTGCATTC GGACGGCGGC GGCAAGCGCG CGGCCGCGGG CAAGCCGGTG
TTCGGCTTCG AACGCGTGAT GAAGGTGCAC GAATACCTGG CCGAGCTGTT CGCCACGCAT
GCGTCGAAAC TCGTGCGCGC GGGGTTCATC AACGGGCTGC CGGGGTTCGT CACGCTGGAG
GCCGACGGCG AACTGCAGAC GACCGCGCTC GACATCGACG ACGGGAAGAT CGTCGCGATC
TATGTCGTAC GCAATCCTGA CAAATTGAAG CATCTGCATT GA
 
Protein sequence
MTSVDPATGN AEDRADAAAS FDPLRRTLIR VAYRMLGSVA DAEDIVQEAF IRWMDVDRTE 
VRVPEAFLRR MVMRMCLDQL KSARHQRETY IGPWLPEPVV EQDEQEDVTL PLMLALERLS
PLERAAFLLH DVFGLEFDEI ATTIQRDPAA CRQLAARART HVREARPRFH VEKQRGIELA
EAFFAASRSG DMRALGAMLA EDVSLHSDGG GKRAAAGKPV FGFERVMKVH EYLAELFATH
ASKLVRAGFI NGLPGFVTLE ADGELQTTAL DIDDGKIVAI YVVRNPDKLK HLH