| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6613 |
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| Symbol | |
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| ID | 4308485 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008385 |
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| Strand | + |
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| Start bp | 19412 |
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| End bp | 19948 |
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| Gene Length | 537 bp |
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| Protein Length | 178 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638147752 |
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| Product | conjugal transfer peptidase TraF |
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| Protein accession | YP_771690 |
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| Protein GI | 115345505 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
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| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
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Plasmid Coverage information |
| Num covering plasmid clones | 46 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCGCA TCCTGAAACG CATCGCGGCA GGCGTCGTCA TCGCGGGCGT GGCCGCCCTG
CTGCTGGCCG CCGGCGGCTA TGCCGCCGGT GCCCGCGTGA ACACCACCAA GAGCATTCCG
GTCGGCCTGT ACTGGACGAG CAGCGCGCCG GTGGAGAAGG GGGCCTACGT CCTCTTCTGC
CCGCCGCAGC TCGGCGTGTT CGATGACGCC AAGGAGAGGG GCTACATCGG GGCCGGCTTC
TGCCAGGGCG GCTACGGCTA CATGATGAAG CGCGTTTTAG CCGCTAAAGA CGATGCCGTC
GCCGTCGCCG ATGACGGCGT GCGCGTCAAC GGCGAGCTGC TGCCCCTCAG CGCGCCGATC
AAGGCCGACA AGGCCGGTCG GCCGCTGCCG CGCTATCAGT CCAACAGCTA CACGCTCGGC
AATTCCGAGG TGCTGCTTAT GTCGGACGTG AGCGCCACAT CCTTCGACGG CCGCTACTTC
GGCCCGATCA ATCGTTCGCA AATCAAGACC GTGATCCGTC CGGTCATCAC CTGGTAG
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| Protein sequence | MSRILKRIAA GVVIAGVAAL LLAAGGYAAG ARVNTTKSIP VGLYWTSSAP VEKGAYVLFC
PPQLGVFDDA KERGYIGAGF CQGGYGYMMK RVLAAKDDAV AVADDGVRVN GELLPLSAPI
KADKAGRPLP RYQSNSYTLG NSEVLLMSDV SATSFDGRYF GPINRSQIKT VIRPVITW
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