| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmar10_2988 |
|---|
| Symbol | |
|---|
| ID | 4285191 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Maricaulis maris MCS10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008347 |
|---|
| Strand | - |
|---|
| Start bp | 3267512 |
|---|
| End bp | 3269605 |
|---|
| Gene Length | 2094 bp |
|---|
| Protein Length | 697 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 638142484 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_758207 |
|---|
| Protein GI | 114571527 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 67 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACCCA TCCGCAAAGC GGTTGCGCGA GTAATGCGAT CTCTGGTCAT GAAGTTCACG
CTTCTGACCG GCGCGTTGAT TTTCGCAACG ACACTCATGC TGATGACATT GGAAAACGTG
TCCGCCCAAC GCGAGACCCG TAACCTGTTG ATCGAGCGCT CTGTGGCGAC GCTGCAAGCG
ACAGCCAGTC GTCTGGCCAA CCCGATCTCG ACCAATGATG CCGGCTATGT CGACTTGTAT
GTCGAGGAGC TGATCGCCTC AATCGGTGCA TCCCAGATGT ATGTCCTCAA CAATCGTCGG
GAAGTCCTGG GCGAAGCCTA TGATGATGAT CGCGAGCAAG GACAGCTCCG GGCCGCTGAT
ATTGCGGTGA TGTCTTTGGG TGCAGGCGAT CTGCGCTATG ACCTTCACGA CGGCATGCTG
GAGGTTTCGG CACCGGTCTA TACCCAGTCC CGCCGCCTGG TTGGCGTGGT CTACATGCAG
CAGCCACTGG TCGAGCTGGT CGCCTCACGC AATGCCGCCT TCCAGCGCCA GACCCTGATC
GCCCTGTTTG CGCTTGGCAT CTTCCTGCCG CTGGCTGCGC TGATTGTGGG CCGCGCCCTG
CGCCCGGTGC AGACCCTGAC CGACGCCGCC CGCCTGGCCT CATCCAAGAA TCTCGACATG
CGCATTTCGG TGAAGACCGG TGACGAGCTG GAAGTGCTCG CCAACGCCTT CAACCGCATG
TTTGCGCGCC TCGACGGCAA TCTCAAACGC ATTCACCGCC TGGCCTATGT GGACCTGGTC
ACCGAGCTGC CCAACCGCGA ACGCTTCCGC AAGGAAACCG AACGCGTGGC CCGCAAATCG
CTCGAGGATG GCGGCTCAGG TGCCGTGCTT TTCCTCGACC TCGACCGCTT CAAACGCGTC
AATGACTCGC TCGGCATAGG CGAAGGCGAT CGCCTGCTGG AAATGGTCGG ACGCCGGCTG
TCCGAGGTGA CGCGCGGCTG TGACATGGCG TCGGGCAATA CCGAAGACCC GTCCATGGTG
GCACGTCTGG GCGGCGACGA GTTCACCGTG CTTCTGCCGA CCATCGAAGA CAGTGCCGAC
GCGGCCCGGA TCGCCAACAA GCTGGTCGAC GCGATCCGCC TGCCGTTTGA AATCTCCGGT
CACCAGGTCT TCCTGGGTGT TTCGGTCGGG GTCGCGGTCT TCCCGCAGGA CGGGGCCGAT
CCGGAAACCC TGATGCGGCA CGCCGACCTT GCCATGGCGC ACGCCAAGCG CGCCGGTGGC
TCTGCTGCCC AATTCTTCGA GCCGACCATG AACCAGTCCG CGTTTGAGCG CCTGGTGCTG
GAAAACGAAC TTCGCGATGC CGTCGCACAA GACCAGCTGG TGGTCTTCTA TCAGCCCAAG
GTCCTGATGA CGGATGGCGC TTGCGCCGGT GCCGAGGCTC TCGTGCGCTG GCAGCACCCG
ACAGCCGGCC TGCTGTCGCC GGGCGCTTTC ATCGAGGCCG CGGAAGAATG CGGCCTGATC
GGGGAGATCG GCGACTGGGT CCTGCGCGCC GCCTGCCGCG AAGCCGCCGC CTGGCGCGAT
CGCGGCCTTG AAATCCCGGT AGCGGTCAAT GTGTCGGCCA TGCAGTTCGA ACGCGATGGC
TTCTCGGACT CGGTGCTTGA AGCGCTCGCC GCTGCCAATC TGCCGCCGCA CCTTCTGGAA
CTGGAATTGA CCGAATCCAT CGCCATGGAA AACCCGGAGC GCGTGATCGA ACAGGTCCAG
CCCTTGCGCG ATCGCGGCGT CAATTTCGCC ATCGATGATT TCGGCACCGG CCATTCCTCG
CTCGCCTATC TGACGCGGAT GCCGTTCGAC GTCTTCAAGA TCGATCAGAG CTTCGTGCGC
GACATGACCA CCGATCATCA CGCCCGTATC GTCGTCGAGA CGATCCTGGC GATGGCCAAG
TCACTGAAGC TGGAAACGGT TGCCGAGGGC GTGGAAACAC CGGAACAGCA CCAGATGCTG
CGGGCCCAGG GTGCGACCCT GGCCCAGGGC TTCCTGTTCG CCCGCCCGAT GCCGGCCGGT
GACTTTGTCG CCTTCGCCAC CGAGAGCCAT ACCGACCGCG CCGTCGGCGA GTAA
|
|---|
| Protein sequence | MAPIRKAVAR VMRSLVMKFT LLTGALIFAT TLMLMTLENV SAQRETRNLL IERSVATLQA
TASRLANPIS TNDAGYVDLY VEELIASIGA SQMYVLNNRR EVLGEAYDDD REQGQLRAAD
IAVMSLGAGD LRYDLHDGML EVSAPVYTQS RRLVGVVYMQ QPLVELVASR NAAFQRQTLI
ALFALGIFLP LAALIVGRAL RPVQTLTDAA RLASSKNLDM RISVKTGDEL EVLANAFNRM
FARLDGNLKR IHRLAYVDLV TELPNRERFR KETERVARKS LEDGGSGAVL FLDLDRFKRV
NDSLGIGEGD RLLEMVGRRL SEVTRGCDMA SGNTEDPSMV ARLGGDEFTV LLPTIEDSAD
AARIANKLVD AIRLPFEISG HQVFLGVSVG VAVFPQDGAD PETLMRHADL AMAHAKRAGG
SAAQFFEPTM NQSAFERLVL ENELRDAVAQ DQLVVFYQPK VLMTDGACAG AEALVRWQHP
TAGLLSPGAF IEAAEECGLI GEIGDWVLRA ACREAAAWRD RGLEIPVAVN VSAMQFERDG
FSDSVLEALA AANLPPHLLE LELTESIAME NPERVIEQVQ PLRDRGVNFA IDDFGTGHSS
LAYLTRMPFD VFKIDQSFVR DMTTDHHARI VVETILAMAK SLKLETVAEG VETPEQHQML
RAQGATLAQG FLFARPMPAG DFVAFATESH TDRAVGE
|
|---|
| |