| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmar10_1957 |
|---|
| Symbol | |
|---|
| ID | 4285890 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Maricaulis maris MCS10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008347 |
|---|
| Strand | + |
|---|
| Start bp | 2138958 |
|---|
| End bp | 2140031 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638141457 |
|---|
| Product | polysaccharide biosynthesis protein CapD |
|---|
| Protein accession | YP_757187 |
|---|
| Protein GI | 114570507 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
|---|
| TIGRFAM ID | [TIGR03589] UDP-N-acetylglucosamine 4,6-dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.540068 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 54 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGACA CGACAGCGCC CGATGCGTCT TTCGAGGAAA TGATGAACCA ACGCTCCTTC
CTCGACCCAC GCATGCCGCT CGACGGCAAA ACAATACTCG TCACCGGCGG AACGGGTTCG
TTCGGCCGCA AGCTGACCGA GACCATCTGC GCCGAGTACA AGCCGAAAAA GCTGATCATT
TTTTCGCGCG ACGAGCTTAA ACAGTATGAA ATGGCTCAGG ATTTTTCGCC CAGCGATTAT
CCCTTCCTGC GCTATTTCAT TGGCGATGTG CGCGATGCAT CGCGACTCGA CCAGGCCATG
CGCGATGTTG ACATCGTCAT CCATGCCGCG GCGCTGAAGC ATGTGCCGAT CGCCGAATAC
AATCCATTCG AGTGCATCAA GACCAATGTG ATGGGTGCCG AAAACGTGGT GTGCGCCGCG
ATCAAGCGCG GCGTCAGCCA TGTCTGCGCC CTGTCCACGG ACAAGGCCGC CAACCCGATC
AATCTCTATG GCGCCTCGAA ACTGGCTGCC GATAAAATAT TCACGGCCGC ACAGCACATG
GGCGGCGAAG GCGGCCCGGT CTTCTCGGTC GTGCGCTATG GCAATGTGGT CGGATCACGC
GGCTCGGTCA TTCCCTATTT CCGCCGCCTG ATCGAATCCG GAGCCACCGA ATTGCCGATC
ACCGATCCGC GCATGACGCG GTTCTGGATC ACACTGGAGC AAGGCGTCAA TTTCGTCCTG
TCCAGCCTGT CCATGGCGCG TGGCGGCGAG ATCTTCGTCC CGAAAATCCC GTCCATGAGC
ACAGCCAACC TGGCCCGCAC CATGGCGCCG CACCTGCCGC ACAAGGTGAT CGGGATCCGG
CCGGGCGAAA AGCTGCACGA AATCATGATC CCGGAAGACG ATGCCCGCAC CACGATCGAG
CTTGATGACC GGTTTGCCAT CCTGCCTGCC CACGCAGCCA AGGTGACGGC CCGCTATCTG
GCCAGTGGCG GACATCTTGT GCCCGACGGG TTCAATTACG CCTCCAACAC CAATCCGGAG
CAATTGACCG AGACGGCCCT GCGGCAGTTG ATCGGCATGG CGGCAGCGGC CTAG
|
|---|
| Protein sequence | MSDTTAPDAS FEEMMNQRSF LDPRMPLDGK TILVTGGTGS FGRKLTETIC AEYKPKKLII
FSRDELKQYE MAQDFSPSDY PFLRYFIGDV RDASRLDQAM RDVDIVIHAA ALKHVPIAEY
NPFECIKTNV MGAENVVCAA IKRGVSHVCA LSTDKAANPI NLYGASKLAA DKIFTAAQHM
GGEGGPVFSV VRYGNVVGSR GSVIPYFRRL IESGATELPI TDPRMTRFWI TLEQGVNFVL
SSLSMARGGE IFVPKIPSMS TANLARTMAP HLPHKVIGIR PGEKLHEIMI PEDDARTTIE
LDDRFAILPA HAAKVTARYL ASGGHLVPDG FNYASNTNPE QLTETALRQL IGMAAAA
|
|---|
| |