| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmar10_1474 |
|---|
| Symbol | |
|---|
| ID | 4284584 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Maricaulis maris MCS10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008347 |
|---|
| Strand | - |
|---|
| Start bp | 1615044 |
|---|
| End bp | 1616108 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638140957 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_756704 |
|---|
| Protein GI | 114570024 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0567853 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.0481881 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGCCC GACTAACCAA ACTGGCACTT GCCGCCCTCC TGCCCGGTCT GACGGGAGCA
GCGCTTGCCG TCCAACCCGG ACCGCCGCCG CCTGCCGTCG TGCGTACGGC CGAGATCACC
TCGCTGGACA TGGCCCGCAC GCTGACCACC CCGGCCAGTG TCATGTCTCG CAATGATGCG
CAGATCGCCG CCGAGGCATC CGGGCGCATC ACTTTCATCG CCGAGCCGGG CGACGAGATC
CCCGAGGGCG GGCTGATCGC GCAAATGGAT GACCGCCAGG CCCGTATCCA GCTGGAAGAG
GCCCGCGCGC GGCATGCGCG CGCAACCGCC AATGCCAATT ACCAAAACGC CGAGGCGACG
CGTTATCAAC AGCTGGCAGA AAACGGGACT GTTCCGGCCA CTCGACGCCG CGAAGTGGAA
CTCGCCCGTG ATCTGGCCGT GCAGGACGCG CGAGAGGCCC GCTCGGCGCT CGACCGCGCA
GAACTGGCGC TCGAGCGGAC CCAGATCCGT GCCCCCTTTG CCGGACGGGT CGCCGTGCGC
TTGATTCAGG TTGGTGAATT GTCATCGCCC GGACGCGATA TCGCCCGCCT CGTTGACATT
GAACACAAGG AAGCGGTGGC CCAGGTCCCT GTTGCCGTCG CGCCTTTCCT GCAGGTGGGC
ATGGACGTGT CGCTCTCGCT CTCGGACGGG CAAACCGTGC GGGCCCCGAT CCGTGCCATC
ATTCCGGTCG GCGATGCCGT CTCCCGCACC TTCGAGGTCC GCATAGATCT GGAAGGGTCG
GACTGGATTG TTGGTTCGGC GGCCCGCGTG GCCCTGCCCA CTGAAACTCC CCGGACCCAG
CTCGCCGCGC CCTATGACGC GGTCATCCTG CGCGCCAATG GCAATTTCGT CTTTATCGTC
GATGATGAGG ATGTCGCGCA TCAGGTCGCC GTCATTCCCG GTGTTCGAAG CGACGGCTTG
GTCGCGATTG CCGGAGATAT AGAGCGCGGA CAGCGCGTGG TCGTGTCAGG TGCCGAAACC
CTGTCGGACG GCCGGCTGGT CACCGAGCTG GGCGAGGACG CCTGA
|
|---|
| Protein sequence | MLARLTKLAL AALLPGLTGA ALAVQPGPPP PAVVRTAEIT SLDMARTLTT PASVMSRNDA
QIAAEASGRI TFIAEPGDEI PEGGLIAQMD DRQARIQLEE ARARHARATA NANYQNAEAT
RYQQLAENGT VPATRRREVE LARDLAVQDA REARSALDRA ELALERTQIR APFAGRVAVR
LIQVGELSSP GRDIARLVDI EHKEAVAQVP VAVAPFLQVG MDVSLSLSDG QTVRAPIRAI
IPVGDAVSRT FEVRIDLEGS DWIVGSAARV ALPTETPRTQ LAAPYDAVIL RANGNFVFIV
DDEDVAHQVA VIPGVRSDGL VAIAGDIERG QRVVVSGAET LSDGRLVTEL GEDA
|
|---|
| |