| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmar10_1440 |
|---|
| Symbol | |
|---|
| ID | 4285679 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Maricaulis maris MCS10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008347 |
|---|
| Strand | + |
|---|
| Start bp | 1578037 |
|---|
| End bp | 1579107 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638140922 |
|---|
| Product | nifR3 family TIM-barrel protein |
|---|
| Protein accession | YP_756670 |
|---|
| Protein GI | 114569990 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0100604 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0000369781 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGGATTGCC GCAGCGCAGC ATACTCGCTA GCCTTTGGCC TTACGACGCA CACCGAGGAT
TTGTCCAGCC GCATGCGCTT TTCAATCGAC AGCCACGCCA TTGAAATACC GACGGTCCTG
GCGCCGATGT CCGGTGTGAC AGACCTGCCG TTCCGGCGCC AGGCGCAGCG TTTCGGCGCC
GGCATGGTGG TCTCCGAAAT GGTCGCCTCG GACGCTTTGG CCGCCGGTCG CCGCGACATG
ATCCGCAAGG CAGCACTCGA CGCCTCGTTG AAGCCCTGCG TCATCCAGCT CGCCGGACGG
CAGGCCCACT GGATGTCGGA AGGGGCCCGG ATTGCCGAGG ATGCGGGTGC CGAAGTCATT
GATATCAATA TGGGTTGTCC GGCCCGGCAG GTGACAAAGG GCCTGTCCGG CTCGGCCCTG
ATGCGCGATC TCGACCACGC CCTGACCCTG ATCGAAGCCA CCGTCGGCGC TACCAGCAAA
CCGGTCACCC TCAAGATGCG CCTCGGCTGG GACCATGCCA GCCTGAACGC TCCCGAGCTC
GCCAGACGGG CCCGCGATGC CGGTGTGAAA CTGCTCACCG TGCATGGGCG CACCCGCCAG
CAATTCTACA AGGGTCAGGC CGATTGGGCT GCCGTCCGCA AGGTGGTAGA GGCGGTCGAC
CTGCCGGTCA TCGTCAATGG TGATATCCAC ACCACGGCGG ATGCCCGCGC GGCCCTGGAC
CAATCCGGCG CTGCCGCGGT GATGGTCGGT CGTGCGGCCC AGGGTCGGCC CTGGCTGCTC
GGCGAAATCG GCCGTGAACT GCTGGGTGAG CCGGCGGCCC GAACGCCCTG GAACGACAAG
ATCGACGCGC TCGGCCAGCA ATTCGATGAC TGCCTTGAGC ACTATGGCGA AGGCCTGGGT
ATCCGCATGA TGCGCAAGCA TTTTGCCAGC TTTTGTGATG TCGAATGCGA GGTCGGGGAC
CTGGACTGGG TGCGGGCCCA GCGGGCCATC CTGTGTCGGT CCGACCGGCC GGCCGATGTC
CATGCAGCGC TGGACGGCTT GCGGTCGCTC GATGGGCGGG CGGTGGCATG A
|
|---|
| Protein sequence | MDCRSAAYSL AFGLTTHTED LSSRMRFSID SHAIEIPTVL APMSGVTDLP FRRQAQRFGA
GMVVSEMVAS DALAAGRRDM IRKAALDASL KPCVIQLAGR QAHWMSEGAR IAEDAGAEVI
DINMGCPARQ VTKGLSGSAL MRDLDHALTL IEATVGATSK PVTLKMRLGW DHASLNAPEL
ARRARDAGVK LLTVHGRTRQ QFYKGQADWA AVRKVVEAVD LPVIVNGDIH TTADARAALD
QSGAAAVMVG RAAQGRPWLL GEIGRELLGE PAARTPWNDK IDALGQQFDD CLEHYGEGLG
IRMMRKHFAS FCDVECEVGD LDWVRAQRAI LCRSDRPADV HAALDGLRSL DGRAVA
|
|---|
| |