| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmar10_1084 |
|---|
| Symbol | |
|---|
| ID | 4284214 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Maricaulis maris MCS10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008347 |
|---|
| Strand | + |
|---|
| Start bp | 1179562 |
|---|
| End bp | 1180239 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638140556 |
|---|
| Product | rhomboid family protein |
|---|
| Protein accession | YP_756315 |
|---|
| Protein GI | 114569635 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.0579357 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 57 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGTGC CGCAGCGGGA CGGGTCGGAC GGGCCCTGGC AATCGCCGCC GCCACCACGA
GCGCCGGTTT TCAACGCCAT GCCACCGGCC GTATTGCTGA TCGCCCTCAG TATTGCCGGC
GTGTCACTGC TCGGTCAGGT CTGGCCAGAC TTCCAGCGCT GGGTTTTCAA TGCCGGAATC
TTCATCGCGG CCGAACGTGG GGCCGCGTTG CCGAGCCAGC CGCTGGGACC GGTCGCGCCC
GTGTTCCTGC ACGTCTACAT CCATGCCGGT CTGCTCCATA TCGCCATGAA TCTGGCGATT
CTGGTGGCAA CCGGTCGGGC CGTCAGCCAG CGTTTGGGTC CGGGCCTTCT GGGCTCGGCG
GGCTTCATCT TTCTGTTCTT TGCCTGCGCG GCGACCGGTG CCTCGCTTGA AGCTTTCCTG
CATCAGGGCC CACCCGTATC GATGGCGGGC GCCTCAACGG CGGTCTCCGG CCTGATCGCT
GCCGCCGGCT GGGTCCGGGG CGGCTGGCGT GGCATGGCGG GCTTGGCCCT GCCGTGGATC
GGCATCAATC TGGTGATCGG CCTTCTCGGC GACATGATGC CGATCCCGAT CGCCTGGCTC
GGGCATATCG GCGGCACGCT GGGTGGCATC GTCCTGACGC CGCTGGTGAT CGCGGTGTTC
GAGGAACAGC CTGACTGA
|
|---|
| Protein sequence | MSVPQRDGSD GPWQSPPPPR APVFNAMPPA VLLIALSIAG VSLLGQVWPD FQRWVFNAGI
FIAAERGAAL PSQPLGPVAP VFLHVYIHAG LLHIAMNLAI LVATGRAVSQ RLGPGLLGSA
GFIFLFFACA ATGASLEAFL HQGPPVSMAG ASTAVSGLIA AAGWVRGGWR GMAGLALPWI
GINLVIGLLG DMMPIPIAWL GHIGGTLGGI VLTPLVIAVF EEQPD
|
|---|
| |