| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmar10_0447 |
|---|
| Symbol | |
|---|
| ID | 4285632 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Maricaulis maris MCS10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008347 |
|---|
| Strand | + |
|---|
| Start bp | 523875 |
|---|
| End bp | 524624 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638139910 |
|---|
| Product | tRNA pseudouridine synthase A |
|---|
| Protein accession | YP_755678 |
|---|
| Protein GI | 114568998 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0101] Pseudouridylate synthase |
|---|
| TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 0.801238 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCGCT ACAGGATCAC CATCGAATAT GACGGCCGCC CCTTTTCAGG CTGGCAACGC
CAGGACAATG CGCCATCCGT GCAGGAAAGC CTCGAGCGGG CCGCGGAAAA GCTCGATGGC
GCCCCGGTCC TCGTCTATGG CGCCGGGCGC ACCGATAGCG GTGTTCACGC CCTGGCCCAG
GTCGCCCATC TCGACCTGGC CAAGGACCTC TCCACCGACA AGGTCCGCGA TGCCATCAAC
TACCATCTCA AACCGGATCC GGTGGCGGTG ATCGAAGCGG CGCGTGTCAG CGACGACTTC
CATGCCCGTT TCTCGGCCAC CCGGCGCCAC TATCTCTACC GGATGATCGA CCGGCGGGCG
CCGCTGACGC TGGACCGGGG ACAGGTCTGG CGTGTCACCC GCAAGCTCGA CGCCGAGGCC
ATGCATCATG CCGCCCAGGC GCTGCTCGGC CAGCATGACT TCACCACTTT CCGTGATGCC
CAGTGCCAGG CCGAGAGCCC GGTCAAATCA CTCGATGCGA TATCGGTGTC GCGCTATGGC
GAAGAGGTTC AGCTGACCTG TTCGGCGCGC TCCTTCCTGC ATCGGCAGGT GCGCTCGATG
GTCGGGTCCC TGGTCGAGGT CGGGGTGGGC AAATGGTCGG CGCGCGACTT CAAGCGCGCG
CTCGACGCGG CCGACCGCAG CCGGTGTGGC CCGGTCGCGC CGGCAGACGG GCTCTACCTG
ACGGCCGTGG ACTATCCCGG TCCGGCCTAG
|
|---|
| Protein sequence | MPRYRITIEY DGRPFSGWQR QDNAPSVQES LERAAEKLDG APVLVYGAGR TDSGVHALAQ
VAHLDLAKDL STDKVRDAIN YHLKPDPVAV IEAARVSDDF HARFSATRRH YLYRMIDRRA
PLTLDRGQVW RVTRKLDAEA MHHAAQALLG QHDFTTFRDA QCQAESPVKS LDAISVSRYG
EEVQLTCSAR SFLHRQVRSM VGSLVEVGVG KWSARDFKRA LDAADRSRCG PVAPADGLYL
TAVDYPGPA
|
|---|
| |