| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmar10_0398 |
|---|
| Symbol | |
|---|
| ID | 4286491 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Maricaulis maris MCS10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008347 |
|---|
| Strand | + |
|---|
| Start bp | 473012 |
|---|
| End bp | 476137 |
|---|
| Gene Length | 3126 bp |
|---|
| Protein Length | 1041 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638139861 |
|---|
| Product | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
|---|
| Protein accession | YP_755629 |
|---|
| Protein GI | 114568949 |
|---|
| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGTCC AGGCTCGAGA CATGATGCGA TGGGATGATC TTGATGCGGT GAAATTCGCC
GACGAGACGG CGGCGGTCCG TGATCTGGCG GCAGCGACCG GACTGGATGA GGCGGCCCAG
GCCCGCGTCC ACGATGCGGC TGTTGCATTG GTTAAGACAG CCCGCGAGAC CACCAAGTCG
CGCGGACTCA TGGACAGCTT CCTGCAGGAA TTCACCCTGT CCAACCGTGA GGGGCTGGCG
CTGATGTGTC TGGCCGAGGC CCTGCTGCGC GTGCCTGACG CGCCGACAGC CGACAAGCTC
ATCGCGGAAA AGATCTCCGA TGGTGCCTGG TCGGAGCATA TGGGCCGTTC GGAAAACTGG
CTGGTCAATG CCTCCACGAT CGGGCTGATG CTGACCGGCA ATATCATTGA TGTCGAACCG
GAAGCGCGCA AAAGCCCCGG CACCTATCTG CGCAAACTGA CCCAGAAAAT GGGTGAGCCG
GTGATCCGCG CCGCCGTTTT CCGCGCCATG GGCATCATGG GCGAGGAATT CGTGTTGGGG
CGTTCCATCA AGGAGGGCCT CAAGCGCGCC AAGAAGGGTG AGGGCGAGCT GTGCTCCTTT
GACATGCTGG GCGAGGGGGC GCGCACGGCC AAGGACGCGG CGCGCTATCA CAAGCGCTAT
CTGGAAGCGA TCGCCGCGGT CGGCAAGGCC CGCGAGGACG GTCCGGTCGA ACGCGTGCAC
GGCGTGTCGG TCAAGCTCTC CGCCCTGCAC CCCAAATATC TGGCGGTAAA GGAAAAGCGG
GTAATCGAGG AGCTCTACCC GCTGGTGCTT GAACAGGCCG TCGCGGCGAA GTCGCACGAT
ATCAGTTTCT GTCTCGACGC CGAGGAATCC GACCGCCTGA TCCTGTCGCT GAAACTGCTC
GAAAAGCTGG CGCGTGCGCC GGAGCTGGCC GGGTGGAACG GACTCGGGCT GGCGGTGCAG
GCCTACCAGA AGCGCGCCCG CCGGGTGATC GAGACCCTGG TCGAGCTGGG CCGGGCCAGC
GAACGTCGCT TCATGGTCCG CCTCGTCAAG GGTGCCTATT GGGACAGTGA GATCAAATTC
GCCCACCAGA ATGGCTGGCC CGACTTTCCG GTCTGGACCA CAAAGCCGGC AACGGATCTC
AACTATCTCG TCTGCGCCCG CGTGATGCTG GGTGCGCCGG ATGCGATCTA TGGCCAGTTT
GCGACCCATA ACGCCCATTC GCTGGCCGCC GTTCGCGAGC TGGCCCAGCA GGCCGGTGTC
GAGTCCTATG AATTCCAGCG GCTGCACGGG ATGGGTGAGG CGCTCTATGC CGCTGACAGT
CAGCTGAACC TCGATACGCC GGTCCGCGTC TATGCCCCGG TCGGCAGTCA CGAGGATTTG
CTGCCCTATC TGGTCCGCCG ACTGCTGGAG AATGGGGCCA ATACCTCGTT CGTGCACTCA
TTCCTCGATC CGGACGTGCC GGTCGAGCAG GTCGCCAGCG GTCCGTTCGA GGTCGCCAGG
ACAATCGACC GTCACGCCAA GATCGCCCTG CCGCGGGATC TGTATGGCGA AGAACGTGCC
AACTCGGTCG GGCTGGACCT GGCCCAGGCA TCGGCCCGTG ACCGGGTTGC GCGGGCGCTG
ACGGCCTTTG ATCGCGAAGA CCAGTTGATG GCGTCGCCGC TGGTGGCCGG CCATGCGGTC
GATGGCGCGG CGCACCAGGT CATGTCGCCG GTCGACATGG CTCGTCAGGT CGGTGCTGTG
GTCGACGCGT CGGTTGAAGA TGTCGATACG GCCTTCGACA GCGCGGTGGC GGCCCAGCCG
GGCTGGGACC GGCGCGGCGG CAAGGCACGC GGCGCCATCC TGCGCGCCAT GGGCGATGCC
ATGGAGGCCG ACATGGACCG GTTGCTGGCG ATCATGGCGA TCGAAGCCGG CAAGACCCTC
GCAGACGGTA TTGCCGAGGT GCGCGAGGCG GTCGATTTTT GTCGTTATTA TGCCGCCCAG
GCCGAACGTG AGTTCGACAG CGCCGTCCGC CTGCCGGGAC CGGCGGGCGA GACCAATCAT
CTGGGCATGA AGGGGCGCGG TGTCTTTGTC ACCATCAGCC CGTGGAACTT CCCGCTGGCC
ATTTTTGCCG GCCAGATTGC GGCGGCGCTG GCCGCGGGCA ATACCGTTCT GGCCAAACCG
GCCGAGCAGA CCCCTTTGAT CGCCTTTGAA GCGGTGAGGA TGTTCCACGC TGCCGGGCTG
CCGGCGGATG TCCTGCACCT GTTGCCGGGG CGCGGCGAGA TCGTCGGCGC AGCGCTGACC
ACCGATCCCC GCACGGCCGG CGTCGCCTTC ACTGGCTCGA CCGAAGTGGC ACGCCTGATC
AACCGCTCGC TGGCGGCCCG CGAAACGGCG ATCGCGCCTC TGGTCGCCGA GACCGGCGGG
CTCAACGGCA TGTTCGTCGA TACAACGGCA CTGAAGGAAC AGGTCATTGA TGACGCGATC
AACTCGGCCT TCGGTTCGGC CGGTCAACGC TGTTCGGCGC TGCGGGTGAT CTTCCTGCCG
GAAGATACGG CAGACGAGAT CATCGAGGGT CTGGCCGGCG CCATGGACGA GTTGCAGATC
GGTGATCCGA CCGATCCGGC GACTGATGTC GGGCCGGTGA TCGACAATGA GGCCCGGGAA
ATCCTGCTGC GCCATGTCGA GCGCATGGAG GCCGGTGCGA AGATCATCAA GCAGATCGAT
GTCGGCGACA AGTTTGACAG CGGTTTCTTC TTTGGCCCGA CCCTGGTCGA ACTGCCCTCG
CTGGACCTGC TCGAGCGCGA GGTGTTCGGG CCGATTCTTC ATGTCGTGCG CTACAAGCGC
AAGGAAATGA CGGCCATTGC CGCCGAGCTG GCCGACAAGG GCTACGGCCT CACCCTGGGC
ATCCATTCCC GCCTGTCATC TTTCCACAGG CAAATTCAGT CGCTCGTGCC GGCCGGCAAT
ATCTACGTCA ATCGCAACAT GGTCGGTGCC GTTGTCGGGG TCCAGCCGTT CGGCGGGGAA
GGCTTGTCTG GCACGGGTCC CAAGGCGGGT GGTCCCCACT ATCTGCATCG TTTCGCAGGC
GAGCGGACGG TCACAATCAA CATTGCGGCG CAGGGTGGTG ACCCGGAGCT GCTCAATCTC
GACTGA
|
|---|
| Protein sequence | MNVQARDMMR WDDLDAVKFA DETAAVRDLA AATGLDEAAQ ARVHDAAVAL VKTARETTKS
RGLMDSFLQE FTLSNREGLA LMCLAEALLR VPDAPTADKL IAEKISDGAW SEHMGRSENW
LVNASTIGLM LTGNIIDVEP EARKSPGTYL RKLTQKMGEP VIRAAVFRAM GIMGEEFVLG
RSIKEGLKRA KKGEGELCSF DMLGEGARTA KDAARYHKRY LEAIAAVGKA REDGPVERVH
GVSVKLSALH PKYLAVKEKR VIEELYPLVL EQAVAAKSHD ISFCLDAEES DRLILSLKLL
EKLARAPELA GWNGLGLAVQ AYQKRARRVI ETLVELGRAS ERRFMVRLVK GAYWDSEIKF
AHQNGWPDFP VWTTKPATDL NYLVCARVML GAPDAIYGQF ATHNAHSLAA VRELAQQAGV
ESYEFQRLHG MGEALYAADS QLNLDTPVRV YAPVGSHEDL LPYLVRRLLE NGANTSFVHS
FLDPDVPVEQ VASGPFEVAR TIDRHAKIAL PRDLYGEERA NSVGLDLAQA SARDRVARAL
TAFDREDQLM ASPLVAGHAV DGAAHQVMSP VDMARQVGAV VDASVEDVDT AFDSAVAAQP
GWDRRGGKAR GAILRAMGDA MEADMDRLLA IMAIEAGKTL ADGIAEVREA VDFCRYYAAQ
AEREFDSAVR LPGPAGETNH LGMKGRGVFV TISPWNFPLA IFAGQIAAAL AAGNTVLAKP
AEQTPLIAFE AVRMFHAAGL PADVLHLLPG RGEIVGAALT TDPRTAGVAF TGSTEVARLI
NRSLAARETA IAPLVAETGG LNGMFVDTTA LKEQVIDDAI NSAFGSAGQR CSALRVIFLP
EDTADEIIEG LAGAMDELQI GDPTDPATDV GPVIDNEARE ILLRHVERME AGAKIIKQID
VGDKFDSGFF FGPTLVELPS LDLLEREVFG PILHVVRYKR KEMTAIAAEL ADKGYGLTLG
IHSRLSSFHR QIQSLVPAGN IYVNRNMVGA VVGVQPFGGE GLSGTGPKAG GPHYLHRFAG
ERTVTINIAA QGGDPELLNL D
|
|---|
| |