| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmar10_0304 |
|---|
| Symbol | |
|---|
| ID | 4284098 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Maricaulis maris MCS10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008347 |
|---|
| Strand | + |
|---|
| Start bp | 363783 |
|---|
| End bp | 365528 |
|---|
| Gene Length | 1746 bp |
|---|
| Protein Length | 581 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638139767 |
|---|
| Product | pyridoxal-dependent decarboxylase |
|---|
| Protein accession | YP_755535 |
|---|
| Protein GI | 114568855 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.0782914 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAAG TATCCGGGTG TCTGGAAGGG GTCAGCTTCC TCGGGCCGAA ATCCGAGAAT
GCCAACTGGC TTCGATCCGA GTTCGATCGT GTCCTGGACC AATGGTTCGA CTGGCGCCGC
GCGCTGTTCA GCGAGGATCC CTCACCGATC CCGGAGTCGA TCCGACTGAC GCCGGATTTT
CTCGCCGGCC AGGACATGCT CTCACAAAAA GTCCGTGAAC TCAGCGACAT GATGACGGGG
GAAGTGCCCA AGTACACGCC CCGTTACATT GGTCACATGG TGTCGGAACT GTCAGTGCCC
GCCTTGCTCG GGCATTTTGT CACGCTGCTG CACAATCCGA ACAATACGTC TCGCGATGTG
GCCCGTGTGA GCGGCAGGGT CGAGGATGAG GCGATCTCCA TGCTGGCCGC GATGATCGGT
TTCGATCCGG CCCGGGCGCA GGGTCATTTC ACCAGTGGTG GCACCATCGC CAATTTCGAG
AGCGTCTGGC GAGCCCGCTA CCGGATGGAT CACTCCCTGG CATTGGGTCT GTGCATCGCA
GAAAAGACAG GCGAGCCATT TGATCCGGTC AGCTTCGCTC ACCTTGGATG GGAAGCCCAC
ACGGCCCTGG CCGCAACTCA CAACATCACC GATGCGGAGC TGCGTGAAGC CAGCGGAGTC
CTGGGCAATC CGTTCCGGAT TGCGGCCAGA ATTACCCGCG CGTCCGGCCG CGAGTGGAAC
GGCCCGGTCC TGTTGGTCCC GGGCAACAAG CACTTCTCAT GGCAGAAGGC CGCGAATGTT
TTCGGCCTGG GTGAGGAGGC CTTCTGGACG ATTGGGCTGG ACCGGAATGG CCGGCTCAGC
CTCGCATCAT TGCGCGAAGC AATTGAACGG GCCTTCGCCG CTGGTCGCCC GGTCCTTGCC
GTGGTCACCG TCGCCGGCAC GACAGAAGCG GGTGAAATCG ATCCGGTTGA CGGTGTCTGT
GATGTGCTCG ACGCGTGGCG CGATGCGGGC CGTGACATCT GGCATCATGT CGATGCGGCA
TGGGGCGGCT TCCTGTGCTC GATGTTGGGT GGTGACGCCG GTCGGGTCCT GAGCGAGCAT
GCCGGTCGCG CGTTGAAGGC CATTCGCCGG GCCAACTCCG TAACGTTGGA CCCACACAAG
CTGGGATATG TGCCGTATGC CTGTGGCGCC TTCCTTGTGA GGGACCAGGC CAGCTACGCC
AATTCGACTT TCGCAGCGCC GTATATCGAC CGGTCGGCTC CCAATGACCG ATGGATGATG
ACGCTGGAAG GTTCGCGCAG CGGCTCCGGT GCCGCTGCGG TCTGGCTGAC GGGGAAGACC
CTGACCTTCG GCCCGCAAGG TTTCGGCGAT ATCATGGCGG GCACACTCGA CAGTCGCGCC
TACTTCGAAC AGGCGCTCGT TTCCGGATGC CGCCTTGTCC GGATTCTCGA ACCGGCAGAC
TCCAATATTC TGTGTTTCTC CCTGGCGAAA CAGGGCGAGG GCCTTGCCGC CTCCAATGCG
CGGACCCGGC GTGTTTTCGA AGCATTTGTC GGCGACCCGG AATTTTCAGT CTCCAGGACC
GAACTCTCGG TGGCGAATTA CGGCGCACTG ATCGACAGCC ATCTCGACCG ATACGGCGGT
CAGGCCGATT GCCAGTCCCT GGTCCTGATC CGTTGCGTGT TCATGAACCC GTTCTGGCGG
AATCCGCAGG TTCGGTCGGC CTTGATGCCG CGCTTCCTCG ATCGCCTTGA GACCCACATG
AATTGA
|
|---|
| Protein sequence | MSKVSGCLEG VSFLGPKSEN ANWLRSEFDR VLDQWFDWRR ALFSEDPSPI PESIRLTPDF
LAGQDMLSQK VRELSDMMTG EVPKYTPRYI GHMVSELSVP ALLGHFVTLL HNPNNTSRDV
ARVSGRVEDE AISMLAAMIG FDPARAQGHF TSGGTIANFE SVWRARYRMD HSLALGLCIA
EKTGEPFDPV SFAHLGWEAH TALAATHNIT DAELREASGV LGNPFRIAAR ITRASGREWN
GPVLLVPGNK HFSWQKAANV FGLGEEAFWT IGLDRNGRLS LASLREAIER AFAAGRPVLA
VVTVAGTTEA GEIDPVDGVC DVLDAWRDAG RDIWHHVDAA WGGFLCSMLG GDAGRVLSEH
AGRALKAIRR ANSVTLDPHK LGYVPYACGA FLVRDQASYA NSTFAAPYID RSAPNDRWMM
TLEGSRSGSG AAAVWLTGKT LTFGPQGFGD IMAGTLDSRA YFEQALVSGC RLVRILEPAD
SNILCFSLAK QGEGLAASNA RTRRVFEAFV GDPEFSVSRT ELSVANYGAL IDSHLDRYGG
QADCQSLVLI RCVFMNPFWR NPQVRSALMP RFLDRLETHM N
|
|---|
| |