Gene Mmar10_0105 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmar10_0105 
Symbol 
ID4283848 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMaricaulis maris MCS10 
KingdomBacteria 
Replicon accessionNC_008347 
Strand
Start bp107287 
End bp108801 
Gene Length1515 bp 
Protein Length504 aa 
Translation table11 
GC content62% 
IMG OID638139569 
ProductRNA polymerase factor sigma-54 
Protein accessionYP_755339 
Protein GI114568659 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value0.768383 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGGAT TGATGCAGAA GCTGGATATG CGCCAGGGAC AATCCCTGGT GATGACGCCC 
CAGCTCCAAC AAGCCATCAA GCTGTTGCAG CTCTCGAATA TCGAGCTTGC CGAGTTCGTC
GAAGGCGAGC TGGAACGCAA TCCCCTGCTC GAACGCGATG ACAGTGGCGA ATCGGCCGAA
TCGCAGCGCG AAGAGGGCCA GGGCGAGCCG CGCGAACTGG AATTGGCGGC ACCCTCGGCC
GACGCCAATG ATTCCATCGA TGCCGATGTC GACATGATGC ATGGCGATGA TTCGAAGTCG
GACCTGTCCG GCGTTGACGG GGTCGAGAGC GGCGCCGCCA TGGGCGCCGG GTCGGTCTCT
GGTCACACAT CCGGCGGCAG TCGTGGCCCG GCGAGCGAAG ACTATGACGC CATCGCCAAC
TCCTCGCGCG ACATTTCACT GGCCGATCAC CTGCATGAGC AATTATCGAT GGCGACCGGT
GATCCGGTCG ACCGCCTGAT CGGCGCCCAT CTGATCGACC TGGCCGATGA TGACGGCTAT
ATGCGTTCGG ACCTCGACGA GATCTCGGCC CAGCTGGGTG TCGAACGGGC CCGCGTCGAA
GCCGTGCTCG ACCTGACCCA GACCTTCGAC CCGGCCGGCG TGATGGCCCG TGACCTGCCC
GAATGCCTGG CCCTGCAGCT CAAGGACAAG GACCGGCTCG ACCCGGCCAT GGCGACCCTG
CTGGACAATC TCGAGCGCCT CGCCAAGCAT GACTATGTCG CCCTGAAATC CCTGTGCGGC
GTCGACAGTG AAGATCTCGA CGAGATGATC TCCGAGATTC GCGCCCTGAC GCCCAAGCCG
GGGCATGCCT TCGGCAGCGA TTCGACCCGC GCGGTGGAAC CCGATGTCTT CATCCGTCAG
TCGCCGGACG GCAGCTGGCA GGTCGAGCTG AATTCAGAGA CCCTGCCGCG CGTCCTGGTC
AATAACAGCT ATTTCAATGA AATCTCGGCG GTTGCCAAAT CCGAGACCGA CAAGACCTTC
ATCACCGAGT GCTCACAAAA TGCCTCCTGG CTGGTCAAGA GCCTCGACCA GCGCGCCCGG
ACGATTCTCA AGGTGGCGAG TGAAATCGTG CGCCAACAAG ACATGTTCCT GGCTCATGGC
GTCGCCTATC TGCGCCCGCT CAATCTGAAA ACCGTCGCGG ATGCCATCGG CATGCACGAA
TCGACCGTCA GTCGCGTCAC CTCGAACAAA TACGTCGCCA CTGCGCGTGG CATGTTCGAG
CTGAAATATT TCTTCACCTC CGCGATTCCG TCCGCCGGTG GCGGGGAGGC CCACTCTGCC
GAGGCTGTCC GCCATCGCAT CAAGCTGATG ATCGGCCAGG AATCGGCCGA CGGGGTGCTG
TCCGATGACA GTCTGGTCGA ACAATTACGG GATGAAGGGA TTGAAATCGC CCGCCGGACT
GTGGCCAAAT ACCGGGAGGC GCTCAACATC CCGTCCTCGG TCCAGCGTCG TCGCATGCTA
AAACGCGCTG GCTAG
 
Protein sequence
MAGLMQKLDM RQGQSLVMTP QLQQAIKLLQ LSNIELAEFV EGELERNPLL ERDDSGESAE 
SQREEGQGEP RELELAAPSA DANDSIDADV DMMHGDDSKS DLSGVDGVES GAAMGAGSVS
GHTSGGSRGP ASEDYDAIAN SSRDISLADH LHEQLSMATG DPVDRLIGAH LIDLADDDGY
MRSDLDEISA QLGVERARVE AVLDLTQTFD PAGVMARDLP ECLALQLKDK DRLDPAMATL
LDNLERLAKH DYVALKSLCG VDSEDLDEMI SEIRALTPKP GHAFGSDSTR AVEPDVFIRQ
SPDGSWQVEL NSETLPRVLV NNSYFNEISA VAKSETDKTF ITECSQNASW LVKSLDQRAR
TILKVASEIV RQQDMFLAHG VAYLRPLNLK TVADAIGMHE STVSRVTSNK YVATARGMFE
LKYFFTSAIP SAGGGEAHSA EAVRHRIKLM IGQESADGVL SDDSLVEQLR DEGIEIARRT
VAKYREALNI PSSVQRRRML KRAG