| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swol_2260 |
|---|
| Symbol | |
|---|
| ID | 4283066 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophomonas wolfei subsp. wolfei str. Goettingen |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008346 |
|---|
| Strand | - |
|---|
| Start bp | 2605963 |
|---|
| End bp | 2608731 |
|---|
| Gene Length | 2769 bp |
|---|
| Protein Length | 922 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638139140 |
|---|
| Product | DNA primase-like protein |
|---|
| Protein accession | YP_754922 |
|---|
| Protein GI | 114567768 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0358] DNA primase (bacterial type) |
|---|
| TIGRFAM ID | [TIGR01391] DNA primase, catalytic core |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAT TCCATATACT TCGGGAAATC CCCGTAGAGC AAATCATACA AAAATACACT
GAATGCGAAG TATACGATGA AGGCACCTGG CAACTGGTAA TTCCCTGTCC CCTATGCGGA
CATAGTAAAT GCGGTAAGAT CAATACGGAT AATAACACGC TTGCTTGTTT CCGGACGGAA
CAATACTATC TGGATCCTAT TCAGGTTACA CAAAGGATCA GAGAAGTTGA TGAAATGGAA
GCCATTATGG CACTAGCGAA TGATTTCCAG ATTACATTAC CTACTGATTG GCATCAGCAA
CTTGAAGCGC ATCGGCTCAG GCAAAGGCGG AATGAAGCTT GGACAGATTT TGCTGAAGAA
TGTCACGAGC TTTTAACTGA TGAACATCGC CAGTACTGGC GTAGCAGAGG TCTGACTGAT
GAACTGATCA ATTCCATTAA GATAGGGTAC TGTCCTGGCA ATGGCTCAAT CATAACGACA
TTGATAAGTA AAGGTTTCAC CAGGCAAGAA CTGTGGAATT TCGGTTTATC AGTCGGAGAT
GGTTCGCGCG AATTTCTCAC AGTTGGTTAC TACACATTAC CAAACTGGGA TGGGAAAAAA
GTTATTGATG TCCAGGGTAG ACGCAGCATT GATGACCTTA CCCTCACCAC TCCTAGATAT
AAGAACTCTT CGGGTGAGGT AAAAGCATTA TATAATCCGC GGGCTCTTCA GGAAGATACG
GTGTTTCTGG CAGAAGGAGT TCCCGATACC CTGAGTCTTA TTCAGATGGG TTTCAATGCA
TGTGGCTCCT ATGGAGTTGG TGGGGTAAAA GACGAATGGA TACCACTTTT CAGGAAATCT
CATGAGGTAT TTATCGCTTT TGATAACGAT GATGCGGGAA AGACTCAATC TTATAAACGG
GCTAGAGAAA TTGGTGATAA TACCAGGATC ATATTACTAC CTGATGTTAA AGACGTAAAT
GAGTTCCTAG TCAAACACGG TATTGAACAA GGTCAAACCT TAATGCGAGA GTTAGCCGAA
AATGCCAAAA CAGCACTGGA AATGGATATT GATGCTCTGC CTACAGAATC CGGGAAGGTA
GATGAGGATC TACTGAAGGA TATAATAGCT CGTATCTTTA ATTTACCGCC ACTAAGACAA
AACCATTACC GGGATTTAAT CAGACATCAC TTTGGTATGA CTAAAAAGGA TATCGAGCAG
TTCTTTCGCC ATTATCATAA CTTAAAGGTT AGAAATTCCG ATACTTTGGG GATAAAACGG
GAGGACATTG ATACCCCTCA GGTACTGCTC ATCGAAGATC CAAGCTATGT TCGATTAGCA
CAGTCGTTTG TATTGGATAA AGTGCTGTAC GCACAAGAAT TTCAAGCGTT AGGTAATAAC
GAAGGGGAAA GTTATCGGAA ACGGTCTATA CATATAGTTA CCAGTGATCA TGAGCTTTTG
CCCTTACCTG AAAAGGTTAC TAAAGATCCA AATGAAATTA TGATATGGAA ATTAGCGGAG
GATCAACTTT TATTGCGCCG TCCTTTGAAT AGTGCTACCA GGCGCTGGTC CAAAACTGGA
ACTCCGTATT CCATAGATAA GTTTCTAAAA GGTGAAGAAG AACAGGTATC AATTAAGGAT
CTATATCAAC GAATAGAGCG GATGTTCCGC AGGTACTACT ATACTACTGA GGAATATGAT
TACGTTATTC TTAGCCTTTT TACGCTATTT ACCTACTTTT ATGAGCTGTA TGATGCAGTA
CCTTACCTTT ACCTTAACGG ACAGCCTGAA ACTGGTAAAT CAACGATATG CATTTTGATT
CAGCACTTGG CCTTTAATGG AGATATGGTC TCAAATATCT CAGCTTCGGC ACTATTCAGG
GAAGCTGAAC AAAAACAGGT AACTCTTATC CTTGATGAAC AGGAAGGTAT ATCGAACCGA
AGAGCAAACG AGGAAAAGGG CGATTACATG AGTATCATCA AGGATGCATA TAAAAGGACT
GGAACTATCA AAAGACAGTC TACAATTGAT TCGTCTGTTA CCGAAGAGTT TACAGTGTTT
AGCCCTTTAG TCATTGCTAA TGTGATGGGC TTAGAGGATA TTCTTAAAAC CAGAACCATA
GGAATCGCTA CCAAGGCTGC TCCTGCAGCC ACGAGGCTAC AAAGGCTAAG GCCAAGTAGT
AAAGAGTTTC TTGATGAGGT TCAAGTAATA AGGGATCAAT GCTATTGTTG GGTAATGCAA
AATCATAAGG CATTATCAGT CCTCACGACG ATGGACTTTG GCGATATCCT GAACAACCGA
GCCGGGGAGT TATTCCAACC GCTCTTTGCT CTGGCGACCA TGATCGAAGA AATAGCTGAG
GAAAGCGAAA GGTTAAATTT GGTCGAACAA CTGCAAACCA GTTTACCAAG TAAACTTTTC
AGAAGAGCTT CTGTACAGTC CAGAGATACC CTGGAACAGC TTAGAGACGC TTGTCTTGAA
CTCCTGGCTG AAAAGGGAGT AACAGGACCA GATCAAGAAG GACAATGGGT CTCTGTACTG
GAGATTCTAG ATAAATTGGT GGAGATAAAT GATGGTCGTT ATGACGATTA TATGTCACCT
AGATGGATTG GAGAAAAAAT AGCTGCTGCT AACTTTATAG AAACTGCTGC GGATAAACAA
CGAAGGCAAT TTGATACCTT AATTAGGGAC CCTAGAACCC AGCTAGTTAT TGTAAACGAT
AGGCCCCCAG TTAATGAAAC AAAAAGAGTA ATGCATTACT TTCTTCGTTA TGAACTGGTA
TCTCGTTAA
|
|---|
| Protein sequence | MKIFHILREI PVEQIIQKYT ECEVYDEGTW QLVIPCPLCG HSKCGKINTD NNTLACFRTE
QYYLDPIQVT QRIREVDEME AIMALANDFQ ITLPTDWHQQ LEAHRLRQRR NEAWTDFAEE
CHELLTDEHR QYWRSRGLTD ELINSIKIGY CPGNGSIITT LISKGFTRQE LWNFGLSVGD
GSREFLTVGY YTLPNWDGKK VIDVQGRRSI DDLTLTTPRY KNSSGEVKAL YNPRALQEDT
VFLAEGVPDT LSLIQMGFNA CGSYGVGGVK DEWIPLFRKS HEVFIAFDND DAGKTQSYKR
AREIGDNTRI ILLPDVKDVN EFLVKHGIEQ GQTLMRELAE NAKTALEMDI DALPTESGKV
DEDLLKDIIA RIFNLPPLRQ NHYRDLIRHH FGMTKKDIEQ FFRHYHNLKV RNSDTLGIKR
EDIDTPQVLL IEDPSYVRLA QSFVLDKVLY AQEFQALGNN EGESYRKRSI HIVTSDHELL
PLPEKVTKDP NEIMIWKLAE DQLLLRRPLN SATRRWSKTG TPYSIDKFLK GEEEQVSIKD
LYQRIERMFR RYYYTTEEYD YVILSLFTLF TYFYELYDAV PYLYLNGQPE TGKSTICILI
QHLAFNGDMV SNISASALFR EAEQKQVTLI LDEQEGISNR RANEEKGDYM SIIKDAYKRT
GTIKRQSTID SSVTEEFTVF SPLVIANVMG LEDILKTRTI GIATKAAPAA TRLQRLRPSS
KEFLDEVQVI RDQCYCWVMQ NHKALSVLTT MDFGDILNNR AGELFQPLFA LATMIEEIAE
ESERLNLVEQ LQTSLPSKLF RRASVQSRDT LEQLRDACLE LLAEKGVTGP DQEGQWVSVL
EILDKLVEIN DGRYDDYMSP RWIGEKIAAA NFIETAADKQ RRQFDTLIRD PRTQLVIVND
RPPVNETKRV MHYFLRYELV SR
|
|---|
| |