| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swol_2258 |
|---|
| Symbol | |
|---|
| ID | 4283064 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophomonas wolfei subsp. wolfei str. Goettingen |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008346 |
|---|
| Strand | - |
|---|
| Start bp | 2601586 |
|---|
| End bp | 2604261 |
|---|
| Gene Length | 2676 bp |
|---|
| Protein Length | 891 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638139138 |
|---|
| Product | type I restriction-modification system, M subunit |
|---|
| Protein accession | YP_754920 |
|---|
| Protein GI | 114567766 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0286] Type I restriction-modification system methyltransferase subunit |
|---|
| TIGRFAM ID | [TIGR00497] type I restriction system adenine methylase (hsdM) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGCTAATG AAAAAATCAC ACTATCTCAG CTTGAACATT TCCTTTTAAA GGCTGCTGAT
ATTCTGCGCG GTAAGATGGA TGCTTCAGAG TTTAAGGAAT TCATCTTTGG TATGTTGTTT
ATTAAGCGTT TATCGGATGA GTTTGACCTA AAGCGTCAGA AGCTGATTAA AAAGGACTTT
GCACACCTTA AGGATCAACC AGATTTAATA CATGAACTCC TTGAAGATAA AACTTCGTAT
GGTGAAACCT TCTTTGTTCC TGTACGTGCT CGCTGGCATG AATCCTGGGT AGATGAAAAT
GGTGATACAG TCCCTGCCCT AAAGGATCTG AAGTATGATA TCGGAAATAT GTTAAACAAG
GCAATTGCTG CTATAGAAGA GGAAAACGAT GCTCTTGCTG GAGTTCTAAA AAACAACATT
GATTTTAATG CTGTTAAAGG CAAAACTAAG ATCCCTGATC AGAAGTGGAA AGACCTTATC
GATCATTTTA ATCAACCACA GTTCGTTCTG GTAAATGATA ATTTTGAGTT TCCAGATTTA
TTAGGTGCTG CCTACGAATA CTTGATCAAA TATTTTGCCG ATAGTGCCGG GAAGAAAGGT
GGGGAATTTT ATACCCCTGC TGAAGTAGTG CGGCTATTGG TGCAGTTAAC GAAACCGGAG
GCAGGAAATA CAATATACGA CCCAACAGTT GGCTCTGGAG GTTTTTTAAT TCAGTCTTAT
CAGTATGTTG AAGAGCAAGG CCAAGACCCT AACGACTTAG CACTGTTCGG TCAGGACTCC
AACGGTACCG TTTGGTCAAT CTGCAATATG AACATGATAC TCCATAATAT TACACGATTT
ACGATAGAAA ATGGTGACAC ACTGGAAGAT CCGCTCATTT TAGATAAGGG CAAAATACGT
ACATTTGAGC GAGTACTAGC TAATCCGCCC TTTTCCCAAA ATTACAGCCG AGCTAACATG
AAATTTTCTA ATCGGTTCTG GGAATGGTGT CCTGAGACAG GTAAAAAGGC TGATCTTATG
TTTGTACAGC ATATGTTGGC CAGTCTTAAA CCTGATGGGC ATATGGCAAC CATTATGCCT
CACGGTGTTT TATTCCGAGG CGGTAAAGAA AAACTTATCC GCGAGATACT GATTAATGAC
GATGTGATTG AGGCTATTAT TAGTCTGCCA CCCGGATTAT TTTATGGAAC AGGTATACCA
GCCTGTATAT TGGTGTGTAA CAAGAGTAAA CCAGACTCAC TGAAAAATAA GGTTTTATTT
ATCAATGCCG ACCGAGAGTA CGCCGAAGGT AAGGCGCAGA ATAAGCTACG CCCTGAAGAT
ATTGAAAAAA TTGATTTCGT ATTCACTAAC AAGCTAGAAA TTCCTAAATA CAGCCGCCTG
GTTACCAAGG AAGAAATCGT GGAACCCCAT GACTATAATC TTAATATTCG TAGGTATGTA
GACAATACCC CGGAGCCCGA ACCGGAGGAT GTACAAGCTC ATTTGATCGG CGGAATTCCA
GGAACTGAAG TTACCGCAAG GGCCGAAGAT TTTGAACGTT TCGGGGTCCA GTATGACACT
TTGTTTAAAC CTGAACGTCT CGGTTATCTT ACATTTATAG ACTCCATCAC TGATAAAACC
GGAATCAAGA CTATACTCGA ATCGGATCCT GCACTTCAAC AGACTTTTAA TAAACATGGT
GATGCACTGG AGAATTGGTG GTCGGTTGCC CGTGATATAT TTAGCGGACT ACGTAACGGA
AAACGGATGC CGGAAGTCCG TCAGGAACTG CTGATTATGC TTAAGAACAA GCTAATACCA
TTAACAGTAC TTGATGAATT CAAAAGTGCT GGGGTATTCG TGAACTGGTG GCAGCAGATC
AGATACGACC TAAAGACCAT CATTTCAACA GGATGGCACC ATAGCCTTAT ACCTGACGAA
TATTTAATAT CGGAATACTT CCAGTCGGAG GCCGATGAAA TTGAGACATT AGAAGCAGAG
ATCAGTGAGA TAAAAAGTGA ATTGGATGAA GCTGTTGAAA CGGCACAGGA AGTGGCTGGT
TATGAGCCCG AAGAGGACGA GTCAGTAACT GCAACTATAA TTAAGAAGGT ACTTAAAGAT
CTGATTAATG ACCTTAAAGG TAGCGAAGGA GAATCAGCTC GTAAGGAGCA TGGACAGCTT
AAATCCCAGG AAAAGGCTAT TAATGATATC GAGAAGCGCA TCAAGTATAG TAAAGCCTTG
TTAAAGAGAA AAACTGATGA ATTAGAGTTT AAGATCCAGC TTAAACGCCT GGGAGGAGAT
GGTTTTAAAT TAGAAAGCTG GGAACTTATT CAGCAGGTGG ATAAGCAATT AGCAGACCTA
GACCCTAGTA AAAAGGCAGA TAAGAAAAAA ATAATAGCCT TGAATAAGGA CAGAAATGCT
CTTGAGGCTA GAATTGCCAA GACTGATAGT ATTCTTTCGA CTATCGGCGG AATGCTCACT
GAAGAAGAAG CCCAGGAACT TATTTTGAAG AAACTCTATG ATCTGGCTCA GAATGAATTG
AACCGTTATC TTAATTCTGA AAAACGAGCG CTTATTCAGG TGGTAGAAAA TCTCTGGGAC
AAATATGCCG TTTCCAGCAA AGCATTGGAA AAACAACGGG CCGCAACTAT TGAGACTCTA
GAGGGTTTTT TGAAAGGGTT GGGGTATTTG TTATGA
|
|---|
| Protein sequence | MANEKITLSQ LEHFLLKAAD ILRGKMDASE FKEFIFGMLF IKRLSDEFDL KRQKLIKKDF
AHLKDQPDLI HELLEDKTSY GETFFVPVRA RWHESWVDEN GDTVPALKDL KYDIGNMLNK
AIAAIEEEND ALAGVLKNNI DFNAVKGKTK IPDQKWKDLI DHFNQPQFVL VNDNFEFPDL
LGAAYEYLIK YFADSAGKKG GEFYTPAEVV RLLVQLTKPE AGNTIYDPTV GSGGFLIQSY
QYVEEQGQDP NDLALFGQDS NGTVWSICNM NMILHNITRF TIENGDTLED PLILDKGKIR
TFERVLANPP FSQNYSRANM KFSNRFWEWC PETGKKADLM FVQHMLASLK PDGHMATIMP
HGVLFRGGKE KLIREILIND DVIEAIISLP PGLFYGTGIP ACILVCNKSK PDSLKNKVLF
INADREYAEG KAQNKLRPED IEKIDFVFTN KLEIPKYSRL VTKEEIVEPH DYNLNIRRYV
DNTPEPEPED VQAHLIGGIP GTEVTARAED FERFGVQYDT LFKPERLGYL TFIDSITDKT
GIKTILESDP ALQQTFNKHG DALENWWSVA RDIFSGLRNG KRMPEVRQEL LIMLKNKLIP
LTVLDEFKSA GVFVNWWQQI RYDLKTIIST GWHHSLIPDE YLISEYFQSE ADEIETLEAE
ISEIKSELDE AVETAQEVAG YEPEEDESVT ATIIKKVLKD LINDLKGSEG ESARKEHGQL
KSQEKAINDI EKRIKYSKAL LKRKTDELEF KIQLKRLGGD GFKLESWELI QQVDKQLADL
DPSKKADKKK IIALNKDRNA LEARIAKTDS ILSTIGGMLT EEEAQELILK KLYDLAQNEL
NRYLNSEKRA LIQVVENLWD KYAVSSKALE KQRAATIETL EGFLKGLGYL L
|
|---|
| |