| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swol_2139 |
|---|
| Symbol | |
|---|
| ID | 4283190 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophomonas wolfei subsp. wolfei str. Goettingen |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008346 |
|---|
| Strand | - |
|---|
| Start bp | 2457016 |
|---|
| End bp | 2458581 |
|---|
| Gene Length | 1566 bp |
|---|
| Protein Length | 521 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638139019 |
|---|
| Product | putative alpha-isopropylmalate/homocitrate synthase family transferase |
|---|
| Protein accession | YP_754801 |
|---|
| Protein GI | 114567647 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR00977] 2-isopropylmalate synthase/homocitrate synthase family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGATGTGT TAATTTATGA TACCACCCTG CGCGATGGTG CCCAGGGTGA AGGGTTATCG
TTTTCCCTGG ATGATAAACT CAAGATAGTA GAAAAACTTG ATTATTTAGG TATTGCTTAT
ATTGAAGGCG GTTGGCCGGG AAGCAATCCC AAAGACCTGG AATTCTTCAA CCAGGTAAGG
AATTTGGACT TAAAGCATGC GCGTATTACC GCTTTCGGCT CCACCCGCAA ACCCGGGATT
GGGGTCAAGC AGGATGCTAA TCTCCAAGCC CTACAACAGG CGGGTGTTGC TACGGTCACT
ATCTTTGGCA AGGCCTGGGA TTTTCATGTT TTGCGGGCTC TCGAAACTAC TCTCGAAGAA
AACCTGAATA TGATCAGAGA AAGCATTTCC TATCTGAAAG AGCAGGGGAT GGAAGTGTTT
TTTGATGCCG AGCATTTCTT TGACGGCTAT AAGAATAATG CAAATTACGC CTTGCAGGTT
TTACAAGCTG CCCAGGAAGT TGGTGCCGGA TACCTGGTTC TTTGTGATAC CAATGGTGGA
ACCTTATCCT GGGAAATTGA GGAAATAATT AAAGAAGTAC AGAAATATTC TCGGGTACCC
CTAGGAATTC ATGCTCATAA CGATTCAGCT TCGGCAGTTG GTAATTCCCT TATAGCGGTA
AGACAGGGCT GTTCCCAGGT CCAGGGAACC ATTAACGGTT ACGGGGAGAG GTGCGGCAAT
GCTGATCTTT GTTCCATCAT TCCCAACCTG GAGTTAAAGA TGGATAAAAG GGTGCTTCCT
CCCGGGAATT TGAAACGACT GGCGGAAGTC TCTCATTATA TTAGTGAAAT AGCTAATATG
CCTCATCATA ACAACCAGCC TTTTGTAGGC TATGGAGCTT TTGCCCATAA AGGCGGAATA
CATGTTAATG CTCTTTTAAA GGATTCTCTG ACCTATGAAC ACATTGATCC CGAGGAAGTT
GGGAATCACC GGCGAGTTCT GGTTTCTGAA CTGTCCGGCT TATCCAACCT GCTTTACAAG
GCGCGGGAGC TGAATATTGA TATAAACAAT TATGACCATG AAACCCGCCG GGTGATAAAA
CAGATTAAAG AAATGGAAAG CCAGGGGCTG CAGTTTGAAG GCGCCGATGC CTCGCTGGAG
CTCTTCCTGC GCAAGGCTTT TGGGCAGTAT GAGGATTTCT TTCAACTTAA GAATCTTAAA
CTCATAATTG AAAAGAATGA AGACTCCCCC ATAACCGCTG AAGCCATGGT CAAGCTGACT
ATTGGCGAGA AGACTTTCCA CACTGCGGCA GAGGGCGATG GACCGGTCAA TGCTTTGGAT
AATTCCTTGC GTAAGGCTAT TACCGAAGTT TACCCGGAAA TAGGCGAGAT GCACCTGAGC
GATTATAAAG TACGGGTCTT AAACGGCAAT GAAGGTACGG CTGCGCGGGT TCGTGTACTT
ATCGAGTCCG CCGACCAGAA GAGCAAGTGG AGTACGGTAG GTGTTTCCGA GAACATAATT
GAAGCCTCCT GGCAGGCCAT AGTCGATAGT ATTAATTACT TGCTATTTAA AAAACAAATA
ACTTGA
|
|---|
| Protein sequence | MDVLIYDTTL RDGAQGEGLS FSLDDKLKIV EKLDYLGIAY IEGGWPGSNP KDLEFFNQVR
NLDLKHARIT AFGSTRKPGI GVKQDANLQA LQQAGVATVT IFGKAWDFHV LRALETTLEE
NLNMIRESIS YLKEQGMEVF FDAEHFFDGY KNNANYALQV LQAAQEVGAG YLVLCDTNGG
TLSWEIEEII KEVQKYSRVP LGIHAHNDSA SAVGNSLIAV RQGCSQVQGT INGYGERCGN
ADLCSIIPNL ELKMDKRVLP PGNLKRLAEV SHYISEIANM PHHNNQPFVG YGAFAHKGGI
HVNALLKDSL TYEHIDPEEV GNHRRVLVSE LSGLSNLLYK ARELNIDINN YDHETRRVIK
QIKEMESQGL QFEGADASLE LFLRKAFGQY EDFFQLKNLK LIIEKNEDSP ITAEAMVKLT
IGEKTFHTAA EGDGPVNALD NSLRKAITEV YPEIGEMHLS DYKVRVLNGN EGTAARVRVL
IESADQKSKW STVGVSENII EASWQAIVDS INYLLFKKQI T
|
|---|
| |