Gene Swol_2060 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwol_2060 
Symbol 
ID4283248 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophomonas wolfei subsp. wolfei str. Goettingen 
KingdomBacteria 
Replicon accessionNC_008346 
Strand
Start bp2364511 
End bp2366547 
Gene Length2037 bp 
Protein Length678 aa 
Translation table11 
GC content50% 
IMG OID638138942 
ProductSerine phosphatase RsbU regulator of sigma subunit-like protein 
Protein accessionYP_754725 
Protein GI114567571 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2208] Serine phosphatase RsbU, regulator of sigma subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCATTG GTAAAAAGAT ATTGTTTTCC CTGTTGGGTT TATCATTATT GGTAACTCTG 
CTGTTGTGTG CCATCTCCAT ATATGGATTC AACGATATTA AAGCCACCTT TCAGCAAGAG
AATAAAAGCG CTATTGATGA TCTCTATGAG AAAAATGTTG CTGAAATTAC TAAGAGCAGT
TCCAAATTGG CGATCTCGCT GGCCAATTAC TATGCCCAGA CCATCAATAT TGATTTCGAA
CGCATCATGG GTGAGCTTAA TACCATGAAA GGGGATATTG AAACCCTGTA TAATAGTGGG
GGAACCACCC ATGCCATCCC TATCAGCCGT TATGAAGAAT ACATCATCTC CCAGGCCGCC
CACCCCAGCC GGCAGGAAGT TAACCGTACC CTTAATGTTC TTAGCGCGGC TACCCCCATG
TTCGACAATA TCCTGAAGAT TGAGCCGAAG ATATCCCTGG CTTATTTGGT GCTGGAAAAC
GGCATGGTTA TTTCCAGTAC CAAAACCTTT TATCCGGCTG TGGAGAAGGC GGATATGCGT
ACCCGCGACT GGTATAAGGA TGCGGTCAAG GCGGGTACGG TAAACTGGTC CGATCTTTAC
ACCGGCACGG ATAATAGAAG TTATGTCACC TGTGCTACCC CTATTCATGA CAAAAAGGGC
CAATTAGTGG GGGTATTGGC CTTTGATCTG CGGGTCAGCG AGATCTCGGA AAAGACCCTT
AATACCAGCG ACAATACCTA CATCGCGGCC TTCATTATGA ACCGGCAGGG CCATGTCCTA
CTCAGTTCCC TGGATGTAAA GGCCACGGAA AAACAGCCCT ATTTTGAAAA ATTCATCAAA
AACATCGATT TAAAAACGAC TATTTCGGAT TATTATTCCG ATGACAGCTC CATCATCGGC
TATGCCCCGA TCAAATCCAC CGACTGGCTG CTGGTGACGG TGCTGGATTA CGAAATGATG
ATGGCCCCGG TGCAGGCCGT GGCGGAATCA GTGTCCGCTA CCGGCGCTAA AATGGAACAG
GTAATTAGCG ATGAAACCCG CAGGGTTTTC TTTATTTTCC TGATAATCAT TCTGGTTTCG
CTGCCGCTGG TATTCATGAC CGCCACCCGG CTGAGCCGGT CGATTACCCG GCCGGTGGAA
ATACTGGCCG ACGGCGCCCG GGTAATCGGC GAGGGCAACC TGGATTATGA ATTTGCCGAC
CTGGGGACGG ATGAAATGGG CATGCTGGCC ACCACCTTCA ATGGCATGAT CGTTCGTCTT
AAAGAATACA TGGAAGCGGT AGCCCGGTCG GCTGCTGATA AGCAGCGGCT GGAATCAGAG
CTGGAGGTAG CCCGCGATAT CCAACTGGGT ATGCTGCCCC AGCAAATTGA CTGCCCCGGT
TATGATATTA CCGGCATGAT GGTGCCCGCC AAGGAAGTGG GTGGTGATTT CTACGATTTC
TTCATGCTCA ATGATCAAAA ACTATGTTCC GTGGTGGCCG ATGTCTCCGG CAAAGGCGTG
GGGGCAGCAT TATTCATGAC CGTGGCGAAA ATGGTTCTGA AAACTGCGGC CCAGGCCCAT
AATATTACGG TGGATAAACT GCTCAGCACC GCCAACAACC TGCTCTGCCA GGAGAATCCG
GCGGAACTAT TCGTGACTGC CTATGTGGGA ATTATGGATA TTAATAGCGG CGAGATTGCT
TATGCCTGCG CCGGGCATAA TCCGCCGGTT ATCGTCCACC CGGACGGAAG CAGTGAATTC
GTACCGGTAA AACCCAAACT GCCTTTGGCA GCTATGGAAG GCATCCAGTA CCCGATTATG
TACACCCAGC TGCAAACGGG CGAGACCCTG GTTCTTTATA CCGATGGAGT AACCGAGGCC
ACCAACCTGG ACGAAGAACT GTATGGCGAT GCCCGCTTGC TGGCGGCCCT ACCCTCGGTA
AAGCGGCTAT CCGCGCCGGA AATAATCGAA GGAATCAAGT CGAATGTAGA TATATTTGTG
GGTGAAGCTC CGCAGTTTGA CGACATCACC ATTGTCGCCA TCCGCAAAAT AAGCTGA
 
Protein sequence
MSIGKKILFS LLGLSLLVTL LLCAISIYGF NDIKATFQQE NKSAIDDLYE KNVAEITKSS 
SKLAISLANY YAQTINIDFE RIMGELNTMK GDIETLYNSG GTTHAIPISR YEEYIISQAA
HPSRQEVNRT LNVLSAATPM FDNILKIEPK ISLAYLVLEN GMVISSTKTF YPAVEKADMR
TRDWYKDAVK AGTVNWSDLY TGTDNRSYVT CATPIHDKKG QLVGVLAFDL RVSEISEKTL
NTSDNTYIAA FIMNRQGHVL LSSLDVKATE KQPYFEKFIK NIDLKTTISD YYSDDSSIIG
YAPIKSTDWL LVTVLDYEMM MAPVQAVAES VSATGAKMEQ VISDETRRVF FIFLIIILVS
LPLVFMTATR LSRSITRPVE ILADGARVIG EGNLDYEFAD LGTDEMGMLA TTFNGMIVRL
KEYMEAVARS AADKQRLESE LEVARDIQLG MLPQQIDCPG YDITGMMVPA KEVGGDFYDF
FMLNDQKLCS VVADVSGKGV GAALFMTVAK MVLKTAAQAH NITVDKLLST ANNLLCQENP
AELFVTAYVG IMDINSGEIA YACAGHNPPV IVHPDGSSEF VPVKPKLPLA AMEGIQYPIM
YTQLQTGETL VLYTDGVTEA TNLDEELYGD ARLLAALPSV KRLSAPEIIE GIKSNVDIFV
GEAPQFDDIT IVAIRKIS