Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swol_2053 |
Symbol | |
ID | 4283276 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophomonas wolfei subsp. wolfei str. Goettingen |
Kingdom | Bacteria |
Replicon accession | NC_008346 |
Strand | - |
Start bp | 2354837 |
End bp | 2356927 |
Gene Length | 2091 bp |
Protein Length | 696 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638138935 |
Product | transcriptional regulator |
Protein accession | YP_754718 |
Protein GI | 114567564 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00000640776 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGTAT ATGAAGTAAT GAACCCCAGG CTATTGCCCC TGCGACCCAG GCAGACTATC GGTGAGGTTT CACGCTTATT TATTGATTTT TCACTCGATG CATCTCCAGT TCTGAATGAA GACCAGGAAT TAGTTGGACT GATTACGAAG AATCGTTTGC TGCAAGTACT GTCACAAGAA TCCCCCGAAA TAGAAGTACA AGATATAATG CTCACCAACC CAATCACCAT AGCATTTGAC GATGATGTTC CCGATATTAG AAAACAGAAA TTTACCTGCC GGCCGGTTAT GCGCAATGGC CAACTGGTGG GAATGCTGTA TTTTTCTGAT ATACTGGTAG CTCTGGCTCT GGAAATAGAG AAGGGGAAAG AGGAAATAGA AGCGGCCATC GATGCCGTGT ACAACCCGGT TATAGAAATT GACAATGATT TCCGCATCAA GATTTTCAAC CGCCAGGCCA GCCGCTTGCT GGGCATTGAT ATAGAGGAGG CACGCGGGGC CAATGTTCAT GATCTGCTCG GCGGTACAGA GGTACTGGAT TCCCTTATAC ATGGAAACCA CAAGCCTTTA CCGGTTAACA AGCTGGTCAT CGGGGATAGA AGTTTTCTTC CCTACCGCAA TGATGTAGTG CAGGATGGAA ATGTTATCGG TTCGGTACTG GTATTACGGG AAATATCAGA ATTTGAAGAA CTGGTAAGGC AATCACAGTA TACCCAGAAG CTCAACCGGG AGCTGGATGC CATATTTGAG TCCTCTTTTG ATGGCCTGTA TGTTACGGAT GGCCAGGCGA TTACTTTACG TTTGAATAAG GGCTTCGAAA GAATTACCGG GGTTACCGCT GCCGAATGTG TGGGACGGCA CATGGCCGAT CTGGTTAAAG AGGGTAAATT CTCCCGTTCG GGAACTCTGC TGGCTTTGGA AAAAAAGGAG CGAGTTACTA TTTCTTTGGT TGCAGCGACC GGGAATGAGG TGCTGGTAAC CAGTAACCCG ATATTTGATG AAGAGGGTAA TATTATTCTG GTGGTAACCA ATGTTCGTGA CATAACGGAA TTAAATGAAC TGCAAAGGAA GCTGGAGCAG GTGGAAGGAT TGACCCAGCT TTATCGCAGC CAACTGGAGC AGATCAAATT GCAGACCTCC CGCCAACTGG TTTTTAATTC CACTAAAATG AAGGAATTAT TGGATCTGGT CCTACGGGTT ACCGGAGTTG ATTCCACCAT TTTGATTCAG GGTGAATCCG GGGTAGGTAA GGAGTTAATT GCAGAAATTA TTCATTCCAG CAGTAATCGC AAGGATGGCC CTCTAATCAA GGTAAACTGT GGTGCAATTC CAGAGAATCT CCTGGAATCA GAACTTTTTG GTTACGAGGC GGGGGCTTTT ACTGGAGCCA GCAAGAGCGG GAAGATAGGT CTCTTTGAAC TGGCCCAGGG AGGAATTCTA TTCCTGGATG AGATTGGTGA ATTGCCGCTT AACCTGCAGG TTAAACTCCT ACGCTTTTTA CAGGATAAAG AGATACTTCG GGTAGGTGGA GAACAGCCCA TAATTGTGGA TGTGAGAATT TTGGCCGGTA CCAATCGTAA TTTGGTGGAG ATGATTGCCA ATCACCAGTT CAGGTTGGAT CTATATTACC GATTGAATGT GATTCCCATT TTTGTACCCC CGTTACGCGA AAGGCCGGAA GATGTTCCGG TTCTGGCCAA CTATTTTTTG AATGTTTTTA ATAACAAGTA CCAGATGAAT AAGCGCTTGC ATAAATCGGT TATCGATGTA TTAATGGAAT ACCATTGGCC AGGAAACGTA AGGGAATTGG AAAACCTCAT GGAAAGAATG GTTGTCACCA GTATTAATAA CATAATAAGC ATGCAGGATC TGCCGGCTAG TTTTAAGGTT CCACGATTAA AACTGGACAG TGAGCAGGAT CTCTTACCAT TACGGCAGGC GGTTGAGAAT ACGGAGCGTG AGCTTTTAGA GGCGGCTTTT GCCCGTTTTC GCTCCAGCTA CCAGGTGGCC ACTGCCCTGC AGGTCAACCA GTCCACCGTA ATCCGCAAGG CGGCAAAATA TGGAATAAAG CGCCAGGACG GGCGCAGTTA G
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Protein sequence | MKVYEVMNPR LLPLRPRQTI GEVSRLFIDF SLDASPVLNE DQELVGLITK NRLLQVLSQE SPEIEVQDIM LTNPITIAFD DDVPDIRKQK FTCRPVMRNG QLVGMLYFSD ILVALALEIE KGKEEIEAAI DAVYNPVIEI DNDFRIKIFN RQASRLLGID IEEARGANVH DLLGGTEVLD SLIHGNHKPL PVNKLVIGDR SFLPYRNDVV QDGNVIGSVL VLREISEFEE LVRQSQYTQK LNRELDAIFE SSFDGLYVTD GQAITLRLNK GFERITGVTA AECVGRHMAD LVKEGKFSRS GTLLALEKKE RVTISLVAAT GNEVLVTSNP IFDEEGNIIL VVTNVRDITE LNELQRKLEQ VEGLTQLYRS QLEQIKLQTS RQLVFNSTKM KELLDLVLRV TGVDSTILIQ GESGVGKELI AEIIHSSSNR KDGPLIKVNC GAIPENLLES ELFGYEAGAF TGASKSGKIG LFELAQGGIL FLDEIGELPL NLQVKLLRFL QDKEILRVGG EQPIIVDVRI LAGTNRNLVE MIANHQFRLD LYYRLNVIPI FVPPLRERPE DVPVLANYFL NVFNNKYQMN KRLHKSVIDV LMEYHWPGNV RELENLMERM VVTSINNIIS MQDLPASFKV PRLKLDSEQD LLPLRQAVEN TERELLEAAF ARFRSSYQVA TALQVNQSTV IRKAAKYGIK RQDGRS
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