| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swol_1938 |
|---|
| Symbol | |
|---|
| ID | 4283365 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophomonas wolfei subsp. wolfei str. Goettingen |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008346 |
|---|
| Strand | - |
|---|
| Start bp | 2212827 |
|---|
| End bp | 2214725 |
|---|
| Gene Length | 1899 bp |
|---|
| Protein Length | 632 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638138821 |
|---|
| Product | PAS/PAC domain-containing protein |
|---|
| Protein accession | YP_754606 |
|---|
| Protein GI | 114567452 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2202] FOG: PAS/PAC domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTGACTA AAGAGAGAGT CAAGTATCGA AGCCTGCTAG ATAGTATTAA CTCACCAATT
CTTGCTCTGA AAAAGGATTT TAGCATATTG TACTGCAATC AGGCCTATGC TCGCCTGGCC
GGTAAAACGG TGAGTGAGCT GGAAGGAGAA AATCTGCTGG AGATCTTTCC GGGAGGAGAG
GATACCCCTT GCTGCCTGGC TTATTATGAG GTATTGGAAA CCGGTCAGAC TAGAATGGTT
GAACAGCGAA CCGGGAATCG TCTTTTCAGA GAGCAGATCT ATCCAACCCC GTTTGGTCTT
CTGTCTACAG CCGAAGATAT AAGTGAAGAA AGACGTTCGG AAGAAGCCAT CCGGGCGTTT
GTGTCTGAAC CCCGGGTCAT TTTTGACGAA CTGCATGATG CGGTGGTAAT AAGTGATGTA
ACTGGCAATT GCCTGGTAGA TGTCAACCGG ACGGCTTGCA GTATGTTCGG CTATACCCGA
GAAGAGATGC TCCGGCTTAA TTTAGACGAT TTGGCCGCAG GAGAGCCCCC CTATAGCCGG
GAAAACCTGC TCGATTGGGC TAAGAAATCG AATGAACTGT CAGCCCGGCA AATGGAGTAT
AAATGCCGGG ATAAGAATGG ACGGGTGTTC TGGGTGGAAA TGAAGATGAA ACGGCTTTTT
GTCGCCGAAC AGGTACGGCT GCTAACAGTA ATCAAGGAGA TAAGCCAGGA AAAGTATAAA
GAAAAGGATT TGCGTGAAAG TCAGGAGCTA TACCGGGATC TTTTTAATAA TTCCCCAGAC
TTTATGTTTA TCCATGACCT AGACGGTAAT TTTTTGGCAG TAAACCAGGT GGCCGAGAGA
ATTACCGGAT TCTGGTCGGA AGAACTATTA AAAATGAAAT TTTCCCAACT ATTAACTAGT
GAATCCCGTC CTATACTCAG CTCTATCCGC TATAAGAAGC TGGGGAAAAA TGAAAATAGA
ACCTTTGAAG TAGAGATTGG CACCAAATTT GAGAGCAGAG TATTTTTAGA CGTTAGTATC
TGGCCGGTTT ACCGCGATAA CAAATTGAAG GCCATACGGG GTATAGCGCA TGATATTACC
AAACGGAAAA TAGATGAAGA GCGCTTAAGA AAATCGGAAC TGAGGTTACT TTCATTTATT
GATTACTTGC CGGATGCTAC CCTGGCCATT GACCTGGAAG GCCGGGTAGT GGTATGGAAC
CAGGCTATGG AGAGGTTAAC CGGTATAAAG GCTAGTGAAA TGCTGGGTAA GGGAGACTAC
GAATACGGAC TGGCGTTTTA TAATAGCAGG CGGCCGATTA TGGTGGATCT CGTACTCCGG
CCAGATGAAG TCAAGAAATT TTATTCGGTA ATTGAAAAAG ATAATTTAAC GATAATCAGC
GAATTTGATA CTCCCCACCT GCGCGGCCAA GGACATTATC TATGGGGTCA GGCCCTTTGC
TGGTTCGATC ACGAGGGAAA TCTACTGGGA GCTATTGAAT CACTAAGAGA CATTACGGAA
AGATATAAAA GCGAGCAGGC CAATCGGAAA AAGTATGATG AATTGGCGGA ACAATTGGAA
TGTCTGCAGG TTCTGGAAAA CAAGCGGAAC GGGTTTTCCT GCAGTTGCAA CCGGGAAGGT
GAAATAAGCT GGATAAGTAA GAGAGTAAGC AACGCCCTCG GTTTTACTCC TCAGGAATTA
AGAGGGTCAA AATTCTCCTT ATTAATAAAG GAAGAAGAAC GGAAAATATG GGAAAAAGAA
ATTCAAAAAG CCCAGCAGGA AAAAGAATTT GCCGGCTTTA ATCTTTCCAT TGTACGGCAG
GACGATACCT TGTACCCTGC CCGGGTTAGA CTGAAACCTT TATTAGCTGA GGAGGAGCTG
GCCGGGTTCT TGCTTGAAGT AGAAGAAAAG GATGAGTAA
|
|---|
| Protein sequence | MVTKERVKYR SLLDSINSPI LALKKDFSIL YCNQAYARLA GKTVSELEGE NLLEIFPGGE
DTPCCLAYYE VLETGQTRMV EQRTGNRLFR EQIYPTPFGL LSTAEDISEE RRSEEAIRAF
VSEPRVIFDE LHDAVVISDV TGNCLVDVNR TACSMFGYTR EEMLRLNLDD LAAGEPPYSR
ENLLDWAKKS NELSARQMEY KCRDKNGRVF WVEMKMKRLF VAEQVRLLTV IKEISQEKYK
EKDLRESQEL YRDLFNNSPD FMFIHDLDGN FLAVNQVAER ITGFWSEELL KMKFSQLLTS
ESRPILSSIR YKKLGKNENR TFEVEIGTKF ESRVFLDVSI WPVYRDNKLK AIRGIAHDIT
KRKIDEERLR KSELRLLSFI DYLPDATLAI DLEGRVVVWN QAMERLTGIK ASEMLGKGDY
EYGLAFYNSR RPIMVDLVLR PDEVKKFYSV IEKDNLTIIS EFDTPHLRGQ GHYLWGQALC
WFDHEGNLLG AIESLRDITE RYKSEQANRK KYDELAEQLE CLQVLENKRN GFSCSCNREG
EISWISKRVS NALGFTPQEL RGSKFSLLIK EEERKIWEKE IQKAQQEKEF AGFNLSIVRQ
DDTLYPARVR LKPLLAEEEL AGFLLEVEEK DE
|
|---|
| |