| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swol_1918 |
|---|
| Symbol | |
|---|
| ID | 4283579 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophomonas wolfei subsp. wolfei str. Goettingen |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008346 |
|---|
| Strand | - |
|---|
| Start bp | 2181729 |
|---|
| End bp | 2184365 |
|---|
| Gene Length | 2637 bp |
|---|
| Protein Length | 878 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638138800 |
|---|
| Product | Signal transduction histidine kinase-like protein |
|---|
| Protein accession | YP_754586 |
|---|
| Protein GI | 114567432 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGGTA AAACGGAAAG AACTGAAAAG AGTAAGAAAG CCAATACAAA TAGCGAAATC
TTATTTTATC CAGATGATGA GTTCCGGGAG ACCCCAGGTG ATAGCTTACG CTTTATGCTG
GGGGCTTTCA AACATTCCAG CCAGGCCTTT TTGGCCGTCA ATAAGGATGC TTCCTTTAAG
GCGGTAAACC AGGCCCTCTG CAATACTTTG GGATATAGCC GGCAGGAACT AAGGTTGTTA
AATGAGCGCG AAGATCTTAA AGCAATTATA CCTGCAATTA TTGCCGAATA TGAGAATTCT
GGACCAGGAA TAAAGAAAAA CAAGCTAAAT ATTGCTGGCA AAAATGGCGA AGATTTAATG
TTAAAATATG TGGTTAACCG CAGCAGTGAT GGCCGGTATT ATTATATATT TGTGAATGAT
ATCAGTGAGC AGGAACAGAC CGAAATAAGA TTAAGAGAAT CGGAGGAGCG CTATCGTTTG
ATTGCGGATA ATGCTTTTGA TCTTATTAGC ATAATCGATC CCAGGACGAA TTGCTATCGA
TATCTTAGCC CTTCTCATCA TAGGATGCTG GGTTATTCAC CTGAAGAACT GATAGGGAAA
AACTGCTTTG AACATATGCA TCCGGATGAC CGGGCTCGGG TAACAAAAAA GCTGGAAGAA
GGATCAAGAG CAGGTCATGG CCGGGCACAA TACCGCTCAG CAAAAAAAGA CGGGTCCTAT
ATTTGGCTGG AAGCGATAGG TAGAATAATT TGGAATGAGC ATGGAGAAGA AGAAATACTG
CTGGTTACTC GTGATATCAG CGAGCGGAAA AAGGCGGAGG AGGCACTTAA AGCATCGGAA
GAAAGCTATC GCTATATAGT GGATTCTGCT GCTGATGGAA TAACCGTAGT TGATTGTAAC
AGCTACGGTC CTAAATACAC AAATTCCGCC CTGGAAAGAA TGTTGGGTTT TTCCAGCAAA
GAGTATAGCC AGGTAAACCT TTTTGATCGG GTTCACCCGG AAGACCACGA AAGAGTCTTT
AAGGCAGTAA AGGAAGGGGA AAGAACTGGA TATAACAGCG CTGAGTTTCG CTATCGTAAA
AAAGACGGGA ATTATATCTG GTTGGATACC AATGGCAAAA TGCTTTACCG GGACGGCCAG
GCCGAATGGC TTTGTATATC CCGCGATATC AGCAGCAAAA AACAGGCCGA GGAGGAGTTA
AGGTATTCGG AAGAGAGATA CCGCATAATT GCTGATAGCT CCTTCCTGAT GATTTCCACG
TTTTGTCCTG ATAAGATGCA ATATATATAT TGGAATTCCA CGGTTTATAA AATGCTGGGT
TTAACTGCAG AAGATATATC GGGACGGGAT TTATTTTATT GGGTTCATCC TGAGGACCAT
GCCCGGGCTT GCTCTGCATT TCAGGAACTC CTGGAAAATG GTGAGGGAAG CTGTGAATGC
CGGCATCGAA GGAAGGATGG TTCCTATGTA TGGATTGAAG TCCAGGGAAA ACTTATAAGA
AACCCCGCCG GTAAGCTGGA AGTGTTGTTT TTCAGCCGGG ATGTGAGCGA ACTCAGAGAG
GCCCGGGATA AATTGCAATG CCAGCTTGAG GAGCAGCAGG AGTTGATTAA CAACCTGAAC
GAGCTTTTCT ATATCTACGG GCCCGATTTT CGCCTGCGTT TTGTCAACCG TAAAACGATA
GAATGCCTGG GTTACAGCCG GGAAGAGATG ATAGGCAAGT CGATTTTTGA TTTTGTCCCT
GCAGAAGACC TGGAATTGGT TAAAGCTCGC GTACTAGAAC GCGAACATTG TGGGGAGGTA
AAAACCTACG AACACCAGGC TTTATGCCAA GATGGTCGAA AGGTACTGCT GCGGGTAAAA
GGTTCCTTAA TTATGAAAGG AGGTAATCTT GAAGGGGTAC AGATCCTGGC CGAAGATATC
ACGGAGCAGC GCAGGATGGA GAAAGAGATG CTCAGGCTCG CCCAGTTGCA GACAGTGGGG
GAAATGGCTG CGGGGATCGG CCACGAAGTA AGAAATCCCA TGACAACAGT AAGGGGCTTC
CTGCAGCTAA TGTCCCAAAA TACAGAATTA ACCAAATACC AGGCATATTT TGATACTATG
TTGGAAGAAC TGGATCGGGC CAATTCAATT ATTTCTGAAT TTTTGTCCCT GGCCAAGAAT
AAAATGGTAA ACCTTCATAA CCTGAACCTG AATGATATCA TAACGCAATT GTACCCTTTA
CTTCTGGCTG ATGCCATGGT ATCTGATAAG TATATTCTAT TGGAATTAGG GGAAATCCCT
AATTTATTAT TGGATGATAA AGAGATGCGC CAGCTTATTA TTAACCTGGT TCGCAATGGG
CTGGAAGCCA TGGAAGGTGG ACAGAGTTTG GAGATTAGTA CCCGGCTGGA AGCAGAAGAA
GTGATATTAT CGATAAAAGA TCAGGGCAAG GGAATTGATA AAAGTTACTG GGGAAAGCTG
GGCACACCCT TTTTTACTAC CAAAGATAAA GGTACGGGCC TGGGCCTGGC TATATGCTAT
AGCATTGCCC GCCGGCACAA TGCCAGCATC AGGGTAGACA GCAGCAACCG GGGCACTACC
TTCGAAGTCT GTTTCAAAAT GGAACTGCTA GAGGGAATAT TGGAATTTCA ATATTGA
|
|---|
| Protein sequence | MAGKTERTEK SKKANTNSEI LFYPDDEFRE TPGDSLRFML GAFKHSSQAF LAVNKDASFK
AVNQALCNTL GYSRQELRLL NEREDLKAII PAIIAEYENS GPGIKKNKLN IAGKNGEDLM
LKYVVNRSSD GRYYYIFVND ISEQEQTEIR LRESEERYRL IADNAFDLIS IIDPRTNCYR
YLSPSHHRML GYSPEELIGK NCFEHMHPDD RARVTKKLEE GSRAGHGRAQ YRSAKKDGSY
IWLEAIGRII WNEHGEEEIL LVTRDISERK KAEEALKASE ESYRYIVDSA ADGITVVDCN
SYGPKYTNSA LERMLGFSSK EYSQVNLFDR VHPEDHERVF KAVKEGERTG YNSAEFRYRK
KDGNYIWLDT NGKMLYRDGQ AEWLCISRDI SSKKQAEEEL RYSEERYRII ADSSFLMIST
FCPDKMQYIY WNSTVYKMLG LTAEDISGRD LFYWVHPEDH ARACSAFQEL LENGEGSCEC
RHRRKDGSYV WIEVQGKLIR NPAGKLEVLF FSRDVSELRE ARDKLQCQLE EQQELINNLN
ELFYIYGPDF RLRFVNRKTI ECLGYSREEM IGKSIFDFVP AEDLELVKAR VLEREHCGEV
KTYEHQALCQ DGRKVLLRVK GSLIMKGGNL EGVQILAEDI TEQRRMEKEM LRLAQLQTVG
EMAAGIGHEV RNPMTTVRGF LQLMSQNTEL TKYQAYFDTM LEELDRANSI ISEFLSLAKN
KMVNLHNLNL NDIITQLYPL LLADAMVSDK YILLELGEIP NLLLDDKEMR QLIINLVRNG
LEAMEGGQSL EISTRLEAEE VILSIKDQGK GIDKSYWGKL GTPFFTTKDK GTGLGLAICY
SIARRHNASI RVDSSNRGTT FEVCFKMELL EGILEFQY
|
|---|
| |