| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swol_1494 |
|---|
| Symbol | |
|---|
| ID | 4282109 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophomonas wolfei subsp. wolfei str. Goettingen |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008346 |
|---|
| Strand | - |
|---|
| Start bp | 1714697 |
|---|
| End bp | 1715215 |
|---|
| Gene Length | 519 bp |
|---|
| Protein Length | 172 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638138371 |
|---|
| Product | 16S rRNA processing protein RimM |
|---|
| Protein accession | YP_754169 |
|---|
| Protein GI | 114567015 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
|---|
| TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0136988 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAATAGTG ATAAGTTGGT GGCTATTGGG AAAATTGCCG GAACTTATGG TTATGCAGGA
TGGCTTAAGG TGATTCCCCT TACTGATTTC CCGGAACGTT TTTATAAGCT GGATAAGGTT
ATTCTAAATC AGGGAGGAAA GCTGGGGACA TTCCTTGTTG ATGGGCTTAA GGCTCATAAT
AATTTCTATC TATTCAAGTT TAGTGGAATC GATACAGTGG AAGTTGCCCA GGGCTTTCAA
AATGGGATTT TGCAGATTGA TGAGAGTGAA CTTTATCCCT TACCTGAAGG TTATTTCTAC
CACTTCCAAC TCCAGGGACT TTCTGTATAC GATGAAGAAA AGGGCCTGCT GGGGGAGTTA
ACGGATATAA TCGAAACCGG GGCCAATGAT GTTTATGTAG TGGATTCTCC CCAATATGGA
GAAATACTTA TTCCCGCTAT TAAAGATGTT ATCCTAGCGG TAAAGCTGGA AGAAAAGCGC
ATGGAGATTA AGCTTTTACC GGGCTTGATT GAAGATTGA
|
|---|
| Protein sequence | MNSDKLVAIG KIAGTYGYAG WLKVIPLTDF PERFYKLDKV ILNQGGKLGT FLVDGLKAHN
NFYLFKFSGI DTVEVAQGFQ NGILQIDESE LYPLPEGYFY HFQLQGLSVY DEEKGLLGEL
TDIIETGAND VYVVDSPQYG EILIPAIKDV ILAVKLEEKR MEIKLLPGLI ED
|
|---|
| |