| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swol_1379 |
|---|
| Symbol | |
|---|
| ID | 4281941 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophomonas wolfei subsp. wolfei str. Goettingen |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008346 |
|---|
| Strand | - |
|---|
| Start bp | 1596965 |
|---|
| End bp | 1600123 |
|---|
| Gene Length | 3159 bp |
|---|
| Protein Length | 1052 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638138259 |
|---|
| Product | leucine-rich repeat-containing protein |
|---|
| Protein accession | YP_754057 |
|---|
| Protein GI | 114566903 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAATAC TTAAGAATTG CAAAAAAACT ATTTTTAGTA CATTGATAAT AGTTATTTTA
TTATGTTGCA GCAGTCAGGC AGGAGCGGCA CAGGAGGAGG ATTATTCCTA TACTGTAACA
GATGGCAAAG CCACGATTAC GAATTACTCC GGATCTGGAG GAGATGTTAC CATACCAAGT
ACATTGGGTG GAGCTACTGT AACAAATATA GGCCAATATG CTTTTCAGTG TTGCTACAGC
TTAACCAGTG TAACCATACC ACAGGGAGTA ACGAGTATAG GCCAGAATGC TTTTGAAAGG
TGCTCAAACT TAACTAGTAT AACCATTCCG CAAAGTGTAA CGAGTATCGG TCGAACGGCA
TTTTTGCTTT GTTCGGGCTT AACCAGTATA ACTATACCGC AAGGAGTAAC AAGTATAGAA
CAAACAGCTT TTTCGCTTTG TTCAGGTTTA AAAAGTATAA CCATTCCAAA AAGCGTAATG
AGTATAGGTG ATGGTGCTTT TTTCGGTTGC AGATGCTTGA ACAGCATCAA TGTAGATATA
AATAATTCGG AATACACAAG TTTAGACGGT GTGCTTTTTA ATAAAGCAAA GACTATTTTA
GTAGCATGTC CTGGTGCCCG GTCAAGTATC AATATTCCGC CAGAAGTAAC CAGTATCGGC
TACGGTGCTT TTTCTTATTG TTCAGGCTTG ACCAGTATAA ACATACCACA GGGAGTTATC
AGTATCGGTC CCTATGCTTT TTACAGTTGC AGAGGCTTAA AAAGTATAAC TATTCCCCCA
AATGTGAATA CGATAAGCGA TTCAGCTTTC TCCTATTGTA CGGAGTTAAC CGATATAGAC
CTTCCGCAAA GAGTAACAAG TATTGGCCAA TATGCTTTTG AAAGTTGTTC AGCCCTAACC
AGCATAACTA TTCCTCCAGA AATAACGAGT ATCGGTAGAC AGGCTTTTCG TGTTTGCACA
GGCTTGACCA GTATAACCAT TCCTCAAAGG GTAACAAGTA TCGGCGAAGG GGCTTTTTAT
TGGTGTACAG CCTTAACTAG TATGACATTT GAATCAGCAA CAACAGAAAT ATATGATAGT
CCCGATACAA TTCCCGCTGG AACAAAGATT ATTGGCTTTG ACCCATCTAA AGCAAAAGAC
TATGCCACAA AATATAATAG AACATTCCAA ATCAATTCAG TCATTACCTT TACTGATCCT
AATCTTGAAG CAGTTGTTAG GGAAGAAATA AACAAACCCG AAGGCCCAAT AATCGAAACC
GATGTTGAAA GCATTTATGA GTTGTCCATA TTTAGCCGGG GAATCACCAG CCTGGAGGGA
ATCCAGAATC TTAAGAACCT TAAAGGTCTG TATGCTTGGG ACAACCTCAT TACAGATATC
AGCCCTTTAC AAGAACTCAC CCAGCTACAA TGGCTGGACC TGGACGAGGT TAAATTAAAA
GATTTTAGTC CACTGCAATA CCTGGTTAAT TTAGAAGAGT TGTCACTGGC CTTTAACGAT
ATAACAACAC AGCTGGACGG CATACTTGGA AACCTGTCCA AGTTGCTTTC ATTAAATTTA
AAAAATAATA AACTGGGGGA AACAGCAGTA ACCGCTGATA ACATCCGGCA CCTTTATGTT
GTGAACGACC CAAATAATCT GATAAATGAG CTGGGTAAAC TCGGTAATTT GACCGAACTC
AATATTTCCA ATAATAAAAT CACAAGCATT GAAGGGTTGC AAAGCCTGAA GCAATTAAGC
TCTCTGGAGA TTTCAAACAA CCAGATTAAT GATCTGACCC CCTTGCAAGA CCTTTCTGTT
TTGCAAAGCC TTAATATATC CGGCAACATG GTCAGCGATA TCAATCCACT GCAAACGCTG
AACAATATAT CTGAGCTCGA TCTTTCATCC AACCAGATAA CGGATCTCAG ACCGTTAAGT
AACTTGACCA AACTCAGTAG TATTAACCTG TCAAATAACC GGATCAATAA TATTGAAGCT
TTGAGCAGTC TTAATACCGT ATCAACCATC TATCTTGCCG GTAATCAAAT AGCAGACTAC
AGCGTTGTTG AGAGCTTGCC CAATGTTGAG CAATTCACTT CTGATGCGGC AACACTGAAC
ACCACAGGCT GGTATACTCA AACCGGCGTA GCCAGTGATA AGACCTGGCA GGTTAAATTC
AATGCCCCCT TAAAAATAGA TACGGTAAAC GACGATTTCG TATTTGTTAA AGACCAGGAG
GGGAAACGGT GCCCGGTTGA GGTTGGCATG GGTAGTGATA ATTGCACTAT TAGTGTAAAA
GCACCGGCAG CAGGGTACCT ACCGGGCCAA AGTTATTTTT TATATATCAG TAACAAGGTG
CAATCCCAAA GTGGTAAAAA CCTGAACAGC CCATTGAAAA TGCAATTTAT TATTACTGGG
AATAATACCG CCAATCAATC TTTGGAAGCT GCACACAAAA TGCAGGGAGC CTTGGATAAT
ATTTTCCTGA TAAAGGACAT GGTTTCATTT TGTTACGGTC TCAATAGTCT GGTAGACCGT
ATTGAGGATG ATGTCGCTTA CTTGAAGCAA CTGCCCGAAG ATCACTTTAT TGCCGAAGAG
ATGGATAAAG CATATTCATA TGCAGACTGG AGGCATAATG CTCAGCCTAT ATGGGGGACC
GATTCGATTC TTTCAACATA TAATGACCTG TTTGGCAAAA CCAACCGCTT GGTAGATGCC
AGTAAATTCC TTCAGGATCT AAATGCTCTG ATCAAGGATA TAAGCATTGC CGTATATACC
AAGGATTGCA GCTGGTGGAT AACGCAACCC TTAAGACCAA TAAACGAGGT TGGTGCGGTA
CTGGCTTTTA TAGTCGACTG GAACAAAATC AAAGACGGCA AGGTGGTTTT GGGAAATGAC
TTGAAGATCG GGGGCAACAA TGTATTCAAG GTTGGTGAAA ACGACAACCG CCTGTCACTC
ACTATGCTAC ATAAAGCAAA ATGGGAGTGG AAATACCTGC TCGGCACCCC CAGACAGGTA
ATTCCGGTGG CGCAGAGTGA GCAAGCCCGC TGGTTTTCTG CAGATCCAAC TGTAGCTACG
GTGTATAAAG GGATAATTAC CGGGCATAAA CCCGGCAAGA CTACAATTTC TGTAAGGTAC
TATAACAAAA AGGCAACCTG GGAGATAACC GTAAAATAA
|
|---|
| Protein sequence | MLILKNCKKT IFSTLIIVIL LCCSSQAGAA QEEDYSYTVT DGKATITNYS GSGGDVTIPS
TLGGATVTNI GQYAFQCCYS LTSVTIPQGV TSIGQNAFER CSNLTSITIP QSVTSIGRTA
FLLCSGLTSI TIPQGVTSIE QTAFSLCSGL KSITIPKSVM SIGDGAFFGC RCLNSINVDI
NNSEYTSLDG VLFNKAKTIL VACPGARSSI NIPPEVTSIG YGAFSYCSGL TSINIPQGVI
SIGPYAFYSC RGLKSITIPP NVNTISDSAF SYCTELTDID LPQRVTSIGQ YAFESCSALT
SITIPPEITS IGRQAFRVCT GLTSITIPQR VTSIGEGAFY WCTALTSMTF ESATTEIYDS
PDTIPAGTKI IGFDPSKAKD YATKYNRTFQ INSVITFTDP NLEAVVREEI NKPEGPIIET
DVESIYELSI FSRGITSLEG IQNLKNLKGL YAWDNLITDI SPLQELTQLQ WLDLDEVKLK
DFSPLQYLVN LEELSLAFND ITTQLDGILG NLSKLLSLNL KNNKLGETAV TADNIRHLYV
VNDPNNLINE LGKLGNLTEL NISNNKITSI EGLQSLKQLS SLEISNNQIN DLTPLQDLSV
LQSLNISGNM VSDINPLQTL NNISELDLSS NQITDLRPLS NLTKLSSINL SNNRINNIEA
LSSLNTVSTI YLAGNQIADY SVVESLPNVE QFTSDAATLN TTGWYTQTGV ASDKTWQVKF
NAPLKIDTVN DDFVFVKDQE GKRCPVEVGM GSDNCTISVK APAAGYLPGQ SYFLYISNKV
QSQSGKNLNS PLKMQFIITG NNTANQSLEA AHKMQGALDN IFLIKDMVSF CYGLNSLVDR
IEDDVAYLKQ LPEDHFIAEE MDKAYSYADW RHNAQPIWGT DSILSTYNDL FGKTNRLVDA
SKFLQDLNAL IKDISIAVYT KDCSWWITQP LRPINEVGAV LAFIVDWNKI KDGKVVLGND
LKIGGNNVFK VGENDNRLSL TMLHKAKWEW KYLLGTPRQV IPVAQSEQAR WFSADPTVAT
VYKGIITGHK PGKTTISVRY YNKKATWEIT VK
|
|---|
| |