| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swol_1344 |
|---|
| Symbol | |
|---|
| ID | 4281889 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophomonas wolfei subsp. wolfei str. Goettingen |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008346 |
|---|
| Strand | - |
|---|
| Start bp | 1553671 |
|---|
| End bp | 1555734 |
|---|
| Gene Length | 2064 bp |
|---|
| Protein Length | 687 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638138225 |
|---|
| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein |
|---|
| Protein accession | YP_754023 |
|---|
| Protein GI | 114566869 |
|---|
| COG category | [I] Lipid transport and metabolism
[J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0539] Ribosomal protein S1
[COG0761] Penicillin tolerance protein |
|---|
| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming)
[TIGR00717] ribosomal protein S1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0642692 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTATGTAC TACTTGCTCG AAATGCAGGA TTTTGTGCGG GGGTAAGAAA AGCCGTAAAA
ATTGCGGAAG AAGCCGCAGA AGAACCTGAT AAGTGGTTTA GTTTAGGACC GCTGGTTCAT
AATGACGAAG TCGTAAATTA CTTCCGGCAA AAAGGCATAG AGCCAGTGGA TATGTTAGAA
AGAATTGGGG AACAACCGGC CGGGATAATA ATCCGCTCCC ACGGAACTTC CCCTGAAGTG
ATAAAACAAG CCCAGGAACT CGGCTTGGAG GTTAGGGATG CTACCTGTGT TCTGGTAAAA
AAGATTCATG AAATAGTAAC CCGGTTAAGA GGTGAAGATT ATGATATAGT TGTTTTTGGG
GACGCCAGGC ACCCTGAAGT CGAAGGAATA TTGGGGTGGT GTGGCCAGAG AGCTAGTGTA
GTTGCCAGTG CTGATGAAGT TGGTTATTTA CCTGTTATGC CAAAAGTAGC ACTGATTTCC
CAAACCACCA GGGATGAAAA GGAATTTCAA AAGGTAGCGG GAGCTTTAAG TAATAAATGC
CGGGAACTAA AGGTTTTCAA TACTATATGC TCAGCCACCA GGAGCCGACA GGAAGCGGCC
CGGGAATTAT GCCGGAAAGT AGATTTAATG CTGGTAATCG GTGACCTAAA AAGTTCAAAC
ACCCGCACTC TGAGTAAGGA GTGTCAAAAC ACCGGAGTCA GGACTTTTCA AATACAAAAG
GCTTCTGAAA TCAAACCGGA ATGGTTGGAT GGGGTATCAA AGATCGGAAT TACCGCAGGA
GCTTCGACTC CGGACTGGAT AATTAAGGAG GTATTGGATA GGATGACGTT GTACGAGGAA
GAAAAGATGC TGGATGAGAA CCAGGAAACA AATCAGGAAA CCAGCCAGGA AACTCAGGAA
ACTCAGGAGA TCCAGGAGCC AGAGGTTAAG GAAGAAGTAT CTGCCAATGA AGAGTCATTT
GCCAAGCTGG AAGCCGAAAT GGCCGATTTT ACTACTCCCA ATAAAGGAGA TGTAATAAAG
GGCAAGGTTA TTCAGGTGTT GGATGATGAA GTAATGGTGG ATGTGGGTGG CAAATCTGAA
GGAATTATCC CCCTGCGGGA GATGTCCTTA CAAGATATAG ATTCCGCCAA GGAACTGGTT
GAAGTTGGTG ACGAGATCGA AGTAATGGTA TTAAAATGGG ATGATGATGG TACCATCCTG
CTTTCCAAAA AGAAAGTTGA TGCCAAAATA CTTCTGGATG AGTTAGAGGA AAGCTTTAAA
GAAGGAAAAG TAATTACAGG TACGGTTACC GGCAGCGTTA AAGGCGGTTT ATTGGTTGAT
GTTGGAATCG TAGCCTTTTT ACCCGCTTCT CATGTTGAAG ATGGATATGT TAAGAATTTG
GATGAATACA TTAACCGGGA ACTGTCTTTT AAAATAATTG AATTCAATCG CAACAAGAGA
AGAGGTTCTC AAGTAGTGCT TTCCCGCAAA GAACTGGTAG CTGAAGAAAA AGCCAAACAG
AAAAAACAGT TCTGGGAGGA GATCGAAGAG GGACAGGTTC GCAAAGGCAG GATAAAACGG
CTGGTAGATT ACGGCGCTTT TATTGACCTG GGTGGTTATG AGGGCCTATT ACATGTTTCC
GAGATTGCGC ATACCAGAAT TGATCAACCT TCCGATGTCT TACAGGAAGG AGAAGAAATA
GATGTTTACA TCCTGGCTCT GGATAGAGAG AAGGAGAGAG TATCCCTGAG CCGCAAGAAA
TTACTTAAGA GCCCCTGGGA GATAGTGATG GAGAAATTCC AGGAAGGGGA TATTATTGAA
GGTACAGTAG TACGGATTGC TCCATTCGGA GCTTTTGTTG AAATCGAAGC CGGAGTTGAT
GGGTTGGTTC ATATCTCCCA ACTGGCCAAC CATCGGGTGG AGAAACCTGA AGATGTGGTT
CAAGTTAATG AGAAGATTAA AATAAAAATA CTTAGCATTG ACCCCGAAGA AAAGAGAATA
GGTCTTTCCC TGAAGGAAGC TCTGAATGAG ATGGAAAATC AGGAAGTACA AGACTATATG
GAAAAACAAG AAGAGAACGA ATAA
|
|---|
| Protein sequence | MYVLLARNAG FCAGVRKAVK IAEEAAEEPD KWFSLGPLVH NDEVVNYFRQ KGIEPVDMLE
RIGEQPAGII IRSHGTSPEV IKQAQELGLE VRDATCVLVK KIHEIVTRLR GEDYDIVVFG
DARHPEVEGI LGWCGQRASV VASADEVGYL PVMPKVALIS QTTRDEKEFQ KVAGALSNKC
RELKVFNTIC SATRSRQEAA RELCRKVDLM LVIGDLKSSN TRTLSKECQN TGVRTFQIQK
ASEIKPEWLD GVSKIGITAG ASTPDWIIKE VLDRMTLYEE EKMLDENQET NQETSQETQE
TQEIQEPEVK EEVSANEESF AKLEAEMADF TTPNKGDVIK GKVIQVLDDE VMVDVGGKSE
GIIPLREMSL QDIDSAKELV EVGDEIEVMV LKWDDDGTIL LSKKKVDAKI LLDELEESFK
EGKVITGTVT GSVKGGLLVD VGIVAFLPAS HVEDGYVKNL DEYINRELSF KIIEFNRNKR
RGSQVVLSRK ELVAEEKAKQ KKQFWEEIEE GQVRKGRIKR LVDYGAFIDL GGYEGLLHVS
EIAHTRIDQP SDVLQEGEEI DVYILALDRE KERVSLSRKK LLKSPWEIVM EKFQEGDIIE
GTVVRIAPFG AFVEIEAGVD GLVHISQLAN HRVEKPEDVV QVNEKIKIKI LSIDPEEKRI
GLSLKEALNE MENQEVQDYM EKQEENE
|
|---|
| |