| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swol_1286 |
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| Symbol | |
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| ID | 4281721 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophomonas wolfei subsp. wolfei str. Goettingen |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008346 |
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| Strand | - |
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| Start bp | 1486684 |
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| End bp | 1487601 |
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| Gene Length | 918 bp |
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| Protein Length | 305 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638138161 |
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| Product | pseudouridylate synthase |
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| Protein accession | YP_753966 |
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| Protein GI | 114566812 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00677773 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCCTAGAA CTGAGATTCT GCTGGTAGAC GAAGAAATGG AAGGCGAGAG ACTGGATGCC
TTTGTCACAG AACAATTGGA TGAACTTTCC CGCTCGCTGG TTAAAACTCT GATTGAAAAT
GGAGAAATTA GGGTTGATAG CAAACAGCAA AAGCCGAGTT ACCGGCTTAA AGCGGGGGAA
GAGATAATAG TGGAGATACC CGCTGTACGG GAGCTTAAAC TTAAAGCTCA GGATATTCCC
CTGTCTTTTA TATACCAGGA TAAAGATATT GCGGTAATTG ACAAGCCCAA GGGAATGGTG
GCACACCCGG CTCATGGCAA TTGGGAAAAC ACTCTGGTAA ATGCCTTGCT TTTTCATCTA
AAAGACCTTT CCGGTATTAA TGGAGAATTG CGGCCCGGAA TCGTACACCG CCTGGATAAA
GATACCTCCG GGGTTATGGT GATAGCGAAA AATGATATGG CCCACCGTCA GTTGGCGGCG
CAAATCAAGG ATCACAGTAT AAACCGGGAG TATATTACCC TGGTTCATGG AATAATAAAG
GAAAATCTGG GCAGTATCGA AGCTCCCATA GGGAGGAGCA AGCAGGATCG AAAAAAGATG
GCAGTTATCG CCGGGGGGCG TCCAGCCGTT AGCAATTATC AGGTACTGGA GAGGTTGGGC
AATTATACTC TATTAAAAGT AAAGCTCTTA ACCGGGCGTA CCCATCAAAT CAGGGTACAT
TTTGCCTATA TCAAGCATCC GGTAGTAGGG GACCCTCTTT ATGGTTCGGG AAAAAAGCAG
TTAGGGCTTG ATACCCAGGC CTTGCACGCC CATTTGCTGG GTTTTAAGCA TCCGAGCAGT
GGAGAATATC GTGAGTTTAA GAGCGAATTG CCCCTTTATT TTGAATGTAT ACTTTCTGAT
TTGAGAAACA AACGTTGA
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| Protein sequence | MPRTEILLVD EEMEGERLDA FVTEQLDELS RSLVKTLIEN GEIRVDSKQQ KPSYRLKAGE
EIIVEIPAVR ELKLKAQDIP LSFIYQDKDI AVIDKPKGMV AHPAHGNWEN TLVNALLFHL
KDLSGINGEL RPGIVHRLDK DTSGVMVIAK NDMAHRQLAA QIKDHSINRE YITLVHGIIK
ENLGSIEAPI GRSKQDRKKM AVIAGGRPAV SNYQVLERLG NYTLLKVKLL TGRTHQIRVH
FAYIKHPVVG DPLYGSGKKQ LGLDTQALHA HLLGFKHPSS GEYREFKSEL PLYFECILSD
LRNKR
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