| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swol_1110 |
|---|
| Symbol | |
|---|
| ID | 4283645 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophomonas wolfei subsp. wolfei str. Goettingen |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008346 |
|---|
| Strand | + |
|---|
| Start bp | 1280668 |
|---|
| End bp | 1281984 |
|---|
| Gene Length | 1317 bp |
|---|
| Protein Length | 438 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638137980 |
|---|
| Product | tyrosine--tRNA ligase |
|---|
| Protein accession | YP_753791 |
|---|
| Protein GI | 114566637 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0162] Tyrosyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00234] tyrosyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000317082 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCAGGAAA TCCTATATAT AAATACGCTT ACAGAGTTCA AATTATTGCA CATCAAGAAA
TTCAATGCTA TATTTTATGA GCAAGGAGGT AGTATGGTGG ACGAGAAAAC AGTGCTGACA
GAGGTAAATC GACAAATGGA ACTAATCCGG CGGGGCGTGG CCGAAATCAT ACCGGAGGAA
GAACTGGCCC AGAAGCTTTT CCGCTCCATC AAGGAAAAGC GCCCCTTAAG AGCCAAGCTG
GGCCTCGATC CTACCGCTCC GGATATTCAC CTGGGGCATA CAGTAGTTCT TAACAAGCTT
CGCCAATTCC AGGACCTGGG CCATGAAGTT CATCTTATTA TTGGGGACTT TACCGGCCGT
ATTGGCGATC CTTCCGGTAA ATCTGAAACC CGAAAACAAT TAAGCGAAGA AGAAGTAATG
GCTAATGCTG CGACTTACCA GGAACAGATC TTTAAAATCC TGGATCGTGA GAAGACCTTT
ATCCATTTTA ACAGCAGCTG GTTGATGCAA CTCAAGCTGG CCGATGTACT CAACCTGGCC
GGGAAATATA CAGTGGCGCG CATGCTGGAA AGGGATGACT TTTCCAAGCG TTATCGTGAA
GGCTTACCCA TAGGAATACA TGAGTTTATG TACCCCTTGA TGCAGGCTTA TGATTCGGTG
GAACTGCGGG CCGATGTGGA ACTGGGGGGA ACCGATCAAA AATTCAACCT CCTGGTGGGC
CGCAACCTGC TCCGGGAATA CGGCCAGGAA CCCCAGGTGG CACTTACCAT GCCAATATTG
GAAGGAACTG ATGGCGTACA AAAGATGAGT AAAAGCCTGG GTAATTACAT AGGGGTCAAT
GAGGAAGCCT ATGAAATGTT TGGCAAGACC ATGTCTATTC CGGATGAATT AATAGCCCGC
TATTTTGAGC TTTTAACCCG GGTGCCAATG AATGATATCC AGGGCCTGCA GGAAGATATG
AACTCCGGCA AGCTTAACCC GCGGGACGCC AAAATAAGGC TGGCCAAAGA AATAATTAAA
ATCTATCACA ATGAAGAAGA AGCTGAGAAA GCTGAGGAAA AATTCAGGCT GGTCTTTTCC
CAAAGGGATA TTCCGGAGGA TATACCGGTA ATAACCAGCA GCGAAAGAGA AGTTTGGCTG
CCCAAGTTTC TCCACGATAA TTCCATGGTC AATTCCACCA GCGATGGCCG CCGGATGATT
AAACAGGGAG CAGTTAAAGT GAATGGGGAA AAATACCAGG AAGAAAACCT GCTGCTCCAG
GATACCATGG TTCTGCAAGT AGGCAGGCGA AAATTTTGCC GCCTGCGCTT AAGCTAA
|
|---|
| Protein sequence | MQEILYINTL TEFKLLHIKK FNAIFYEQGG SMVDEKTVLT EVNRQMELIR RGVAEIIPEE
ELAQKLFRSI KEKRPLRAKL GLDPTAPDIH LGHTVVLNKL RQFQDLGHEV HLIIGDFTGR
IGDPSGKSET RKQLSEEEVM ANAATYQEQI FKILDREKTF IHFNSSWLMQ LKLADVLNLA
GKYTVARMLE RDDFSKRYRE GLPIGIHEFM YPLMQAYDSV ELRADVELGG TDQKFNLLVG
RNLLREYGQE PQVALTMPIL EGTDGVQKMS KSLGNYIGVN EEAYEMFGKT MSIPDELIAR
YFELLTRVPM NDIQGLQEDM NSGKLNPRDA KIRLAKEIIK IYHNEEEAEK AEEKFRLVFS
QRDIPEDIPV ITSSEREVWL PKFLHDNSMV NSTSDGRRMI KQGAVKVNGE KYQEENLLLQ
DTMVLQVGRR KFCRLRLS
|
|---|
| |