| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swol_0687 |
|---|
| Symbol | |
|---|
| ID | 4283624 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophomonas wolfei subsp. wolfei str. Goettingen |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008346 |
|---|
| Strand | + |
|---|
| Start bp | 786234 |
|---|
| End bp | 787751 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638137562 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_753383 |
|---|
| Protein GI | 114566229 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0007] Uroporphyrinogen-III methylase
[COG1587] Uroporphyrinogen-III synthase |
|---|
| TIGRFAM ID | [TIGR01469] uroporphyrin-III C-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.943133 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGAAAA AAGGACTGGT GTACCTTATC GGGGCCGGAC CCGGAGACCC CGGCTTGTTC
ACCCTGAAAG GCAAACGAGT ACTGGAGAAA GCCGAAGTAG TAGTCTATGA CCGGCTGGTG
GGAGATGAAA TCCTATCCAT GGCCGATCCG GACGCCGAGT TCATTTATGT TGGCAAAGCC
TCATCCCGGC ACGCCTTGTC CCAGGATGAA ATCAACGCCC TGCTGGCCGA AAAAGCCGCT
CAAGGCAAAA TAGTAGCCCG TTTGAAAGGG GGCGACCCCT TCCTCTTTGG CCGGGGCGGC
GAAGAAGCCC TGTATCTGAA GGAGCGAGGC CATAGATTCG AAGTGATACC CGGGATTACC
TCGGCCATCG CCGTACCAGC CTATGCCGGA ATACCGGTAA CCCACCGGGA TGCCACTTCC
AGCCTGGCTA TAATTACCGG GCATGAGAAG CCCGGTAAGC AGGAAAGCTC CATTCATTGG
CAGGAGCTGG CGAGCGGCAT CGGCACCCTG GTTTTTCTGA TGGGAGTCGA GAACCTGGAG
TTCATTTGTG ATAATTTAAT CAGCCACGGT CGGGAGCCCA GCACCCCTGT AGCTTTAATA
AGGTGGGGAA CCCTTCCCCA GCAGCAGGTC TTAAGCGGTA CCCTGGAAAA TATCGTTAAA
CGGGTAAAGG AAAGCGGTTT TCAACCTCCT GCCGTTATAG TGGTAGGGGA AGTAGTGAAG
CTACGGGAAG AGTTGAACTG GTTGGAAAGC CAACCCCTCT GGGGAAAACG AGTAGTCATA
ACCCGCGCCC GCGCCCAGGC CAGCCAGTTG GTGGAAAGAA TCAGAGACCT GGGAGGGCAG
GCCATAGAAT TTCCCTCCAT TAAAATAGAA AAAGAGAAGA ACCTGGCAGC CTTGCATAAT
GCCTTTAAGA ATATTGGCCA GTATGAATGG ATAATATTTA CCAGCATCAA TGCAGTGGAT
ATATTTTTTG CCGAGAGCCG GCAGGCCGGG TTGGATATCC GGGATTTGCA AGGTATAAAA
CTGGGCGCTA TCGGCCCTGC TACCCGCGAT AAACTGCTGA ACAGAGGATT ACGGGTGGAT
GTCGTACCGG AAGATTACCG GGCGGAAGGC ATCCTTAAGG AATTAAGAGA TCGAATCAAG
CCCGGGCAGT GGATTCTCCT CCCCCGGGCC CGGGGAGCCA GGAGCATTTT GCCCGAAACC
CTGCGCCGCT GGGGAGCCCA TGTCAACGAA ATATATTTAT ACCAGGCCAT TGCTGCCAGC
CAGGTTAGCC AGGCCACCCT GAAGAATATA ATTGCCGGAA ATATGGATTA TCTAACATTT
ACAAGTTCCT CAACTGTAAG CAACTTTGTT AAAATAATCG GGGCGGAGAA CATCGCCGGA
TTAAAAGGAA AGGTCAAGGT AGCCTGTATC GGTCCGGTAA CCGCCGACAC CGCCAGGGAA
AACGGTTTTA ATGTTGATAT CCTGGCCCAA GAGTACACCA TTAATGGATT GCTGGAAGCC
ATATTGGCAG ACCTTTAA
|
|---|
| Protein sequence | MEKKGLVYLI GAGPGDPGLF TLKGKRVLEK AEVVVYDRLV GDEILSMADP DAEFIYVGKA
SSRHALSQDE INALLAEKAA QGKIVARLKG GDPFLFGRGG EEALYLKERG HRFEVIPGIT
SAIAVPAYAG IPVTHRDATS SLAIITGHEK PGKQESSIHW QELASGIGTL VFLMGVENLE
FICDNLISHG REPSTPVALI RWGTLPQQQV LSGTLENIVK RVKESGFQPP AVIVVGEVVK
LREELNWLES QPLWGKRVVI TRARAQASQL VERIRDLGGQ AIEFPSIKIE KEKNLAALHN
AFKNIGQYEW IIFTSINAVD IFFAESRQAG LDIRDLQGIK LGAIGPATRD KLLNRGLRVD
VVPEDYRAEG ILKELRDRIK PGQWILLPRA RGARSILPET LRRWGAHVNE IYLYQAIAAS
QVSQATLKNI IAGNMDYLTF TSSSTVSNFV KIIGAENIAG LKGKVKVACI GPVTADTARE
NGFNVDILAQ EYTINGLLEA ILADL
|
|---|
| |