Gene Swol_0456 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwol_0456 
Symbol 
ID4283486 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophomonas wolfei subsp. wolfei str. Goettingen 
KingdomBacteria 
Replicon accessionNC_008346 
Strand
Start bp535502 
End bp537262 
Gene Length1761 bp 
Protein Length586 aa 
Translation table11 
GC content44% 
IMG OID638137341 
Producthypothetical protein 
Protein accessionYP_753162 
Protein GI114566008 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTCAGATC TAACAGTTAA TGAGATTACC AGTATACTTG AGGGTTTGAT TGAAAATCCC 
TATATGTTCT ATGTGATTGT TGACAGTGAT GGAATAATTA GCTCCATTAA CCAAACCTAC
CTGGATATTC TGGAGATGAA GAAAGAAGAT GTCGTAGGAA GGAATATTCT GGATATAACC
CCTAGTTCAG GGTTACCTGA GGTTTTGCGA ACCGGTCGTA TGGACAAGGC GGACATTTGG
ACAGTAAAGG GAAGGGATAC CATAGTAACC AGGGTGCCGA TTATTAAGAA CGGGAAAATA
ATCGGGGCTA TTGCCAGTAG CCTTTTTTTG GACATGTCCG GGGCCAAGAT TCTTATGAAA
AAACTGCAGG AAACGGAGAA GGAATTCACC GCTATTCTGG AGGGTTTGAT AGAAAGTCCT
CATATGGCCT ATGTAATTGT TGATAAAGAA GGTTATATTA CGGTAATGAA CCAGACCTTT
TTGGATATTT TGGAGATGAA AAAAGAGGAG GTAATAGGCA AATATGTACT GGAAATCCTG
CCTCATTCCA AGATGATAGA AATACTGAAA ACCGGCAGGG TGGATAAAGC AGATATATGG
CCTATCCGAG GCCAGGATAC CATAGTTACC CGTACCCCCA TCATAAAGCA TGGCAAGATA
ATAGGAGCTA TCGGACACAG CCTGTTCCTG GATATGTCCG GGGCTAAAAT CCTGGCCAAG
AAACTGCAGG AAACGGAGAA GGAATTAAGC CTTTACCGGG ATGAGGTAAG TCAGATATAT
AGTGCCAGGT GGATCTTTGA CGATTTGGTT GGTTGCAGTC AGGAGTTCCT GGCGGTAAAG
TCCATGGCCC GGCAACTTTC TTACAGCATA TCTACGATTC TCATTACCGG AGAAAGCGGT
ACCGGCAAGG AACTCTTTGC CCAGGCCATT CATAATGGCA GTGAAAGGAA AAATTGGCCT
TTTGTAAGAA TAAATTGTGC CGCCTTGCCC GAAAATTTGC TGGAGTCAGA GCTTTTTGGC
TATGAAGAAG GAGCCTTTAC CGGGGCTAGA AAGGGTGGGA AACCGGGAAA ATTTGAACTG
GCCAAGGGGG GGACTATTTT CCTCGATGAA ATCGGCGATA TGCCCTTGAC CATGCAGACC
AAGCTCTTAA CAGTTTTACA GGAAAAAGTG GTGGAAAGGG TGGGAGGAAC CACCCCAATA
GCTATTAATG TCCGCGTAAT CGCCGCCACC AACCGCGACC TGGAAAAAAT GGTGGAAAAT
CAGGAGTTTC GTGAGGATCT ATATTATCGC CTCAATGTTG TAGGATTGAA TATACCCCCT
TTGAGAAGGC GAATGGATGA TATTCCCCTT TTGGTTAATG ATTTGATTCA TAGAATAAAC
CAGTGTTTGA AAACCGATAT TTCCGGGATT GAGCCAGAAG CGATAGATTT ACTGCAGGAA
TATTCCTGGC CCGGCAATGT ACGGGAACTG GAGAACCTGC TGGAAAGGGC CATAAATTTG
GCACTAATGC ACGGCGAGCA GTTAATCCGG ATGGAGCATT TTCCTTCTCT GAATCAGAAA
AACAAGGATA AGAAATTTGC TAAAATCGAG ATACTGGATG ACGGGCAGAG CAGTCTTCCC
CAGCTTATCG AGAAGATAGA AAAACAGATG ATAATCCAGT ATTTGCAGGA AAGTGGGGGA
AACAAACAGC AAACCGCCAA GATGCTGGGC ATTCACAGTT CCGCTTTGTA CCGTAAATTG
AGTAAATACG GCCTGGAATA G
 
Protein sequence
MSDLTVNEIT SILEGLIENP YMFYVIVDSD GIISSINQTY LDILEMKKED VVGRNILDIT 
PSSGLPEVLR TGRMDKADIW TVKGRDTIVT RVPIIKNGKI IGAIASSLFL DMSGAKILMK
KLQETEKEFT AILEGLIESP HMAYVIVDKE GYITVMNQTF LDILEMKKEE VIGKYVLEIL
PHSKMIEILK TGRVDKADIW PIRGQDTIVT RTPIIKHGKI IGAIGHSLFL DMSGAKILAK
KLQETEKELS LYRDEVSQIY SARWIFDDLV GCSQEFLAVK SMARQLSYSI STILITGESG
TGKELFAQAI HNGSERKNWP FVRINCAALP ENLLESELFG YEEGAFTGAR KGGKPGKFEL
AKGGTIFLDE IGDMPLTMQT KLLTVLQEKV VERVGGTTPI AINVRVIAAT NRDLEKMVEN
QEFREDLYYR LNVVGLNIPP LRRRMDDIPL LVNDLIHRIN QCLKTDISGI EPEAIDLLQE
YSWPGNVREL ENLLERAINL ALMHGEQLIR MEHFPSLNQK NKDKKFAKIE ILDDGQSSLP
QLIEKIEKQM IIQYLQESGG NKQQTAKMLG IHSSALYRKL SKYGLE