Gene Swol_0039 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwol_0039 
Symbol 
ID4282264 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophomonas wolfei subsp. wolfei str. Goettingen 
KingdomBacteria 
Replicon accessionNC_008346 
Strand
Start bp50562 
End bp52064 
Gene Length1503 bp 
Protein Length500 aa 
Translation table11 
GC content49% 
IMG OID638136943 
ProductOrn/Lys/Arg decarboxylase, major region 
Protein accessionYP_752769 
Protein GI114565615 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1982] Arginine/lysine/ornithine decarboxylases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTGGGGAG GAAAAATAAG TCAAAGAATG TCCCCAAACT CACTCAGGAG GTTTGGAATT 
TTGCAGCATA AGGCAACACC TATATATTCG GCACTAAAAA GCTATATGGC AGAAAACAAT
CTGCGCCTGC ACATGCCTGG GCATAGTGGG GGGAAAGGCT TCAAAGTTGA AGAGCTAAGA
GCGGTGGCGG CCATGGATCT CAGCGAGGTT CCGGGTTTGG ATGACCTGCA TTTACCTACG
CAGGCAATAA AAAGCGCCCG CTCGCTCCTG GCTGATGCCT TTGGCGCCGG ACAAAGCCTT
TTTCTGGTCA ATGGGGCAAC TTCAGGGATA CACGCTTTGT TTTTAAGTCT CTTACCCGAG
GGTACAAAAG TAATAGTACC GCGCAATGCC CATCGTTCTT TTTACGGGGG AATGGTGCTG
TCGGGGGCCT TGCCCGTCTA CCTGCCTTGC CGCCTGGCTC CCGGATTAGG AGTAGCTCTG
GCTAACCGCA GTGAAGATAT CTATCATCTC CTAAAGCAAA ATCCCGAGGT TAAAGGGGTT
TTTCTTTGCA GTCCCAGCTA TTATGGGACA TGCTCTGAGT TAGACCAGAT ATCTTTGCTA
TTAAGGGAAA AGAACAAGCT GCTACTGGTG GATGAAGCCC ATGGGGGGCA TTTTCCTTTT
CACTCTGCTT ATCCTCGCCC CGCACTGCAA AGTGGTGCTG ATGCAGTTGT TAATGGTTTG
CACAAGACTT TACCGGTGTT AAACCAGGGA GCCTGCCTTC ACCTGGCAGC AGGATTTGTT
GAATGGGAGC AGGTGTTGGC GACCTGGAGT CTATTAACTA CCACCAGTCC CTCTTATCCT
ATCTTGGCCT CCATAGACCT GGCTCGGCAG CTCATGGTGG AGGAGGGTTA TTCTTTACTG
GAGCGGGCCG CTTGCCTTTC TCAAAACTAC AAAAGCAGGA TAAATCAGAT TAAAGGTTTA
CATTGTTTTG AGGAAGAAGA ATTAAAAGCC CTGCCTGGTA TTTCAGGAGT AGATCCCCTC
AAGGTATTGA TATCTACGCA GGGGTTAATT ATCGATGGTC TGGCTTTAGC TAAATTACTC
CGGCAGAAGT ACCGGATTCA GGTGGAGCTT GCTGCTCCGG AAATCATTCT GGCCATAATG
TCTATTTTTC ATGAAGGCGA TGATTGGGAA AGATTGTACC GGGCTTTGGA AGAACTGGCC
AGGGACTATA GGGCGAGGGC TCCCGTATCT TTAGTAGAAG GGGAAATTCC CCCCCTGCCC
TGCTTAATTC TGGCTCCCCG GGAGGCTTAT ATGGCGACGA AAATATCCCT GCCACTGGAT
GAATGCCGGG GAGCTATCGC GGGAGAGATA ATAGCAGCTT ATCCTCCGGG GATTCCCTGT
TTATTGCCCG GTGAGCTGAT AGATGACACT ATGCTCGACT ACCTGCGTTA CTTGAAAAAA
TCTGGACTAA GGCTACAAGG TCCACAGGAC CCAGCCTTGA ATTATGTTAA AATAATAGAG
TAG
 
Protein sequence
MWGGKISQRM SPNSLRRFGI LQHKATPIYS ALKSYMAENN LRLHMPGHSG GKGFKVEELR 
AVAAMDLSEV PGLDDLHLPT QAIKSARSLL ADAFGAGQSL FLVNGATSGI HALFLSLLPE
GTKVIVPRNA HRSFYGGMVL SGALPVYLPC RLAPGLGVAL ANRSEDIYHL LKQNPEVKGV
FLCSPSYYGT CSELDQISLL LREKNKLLLV DEAHGGHFPF HSAYPRPALQ SGADAVVNGL
HKTLPVLNQG ACLHLAAGFV EWEQVLATWS LLTTTSPSYP ILASIDLARQ LMVEEGYSLL
ERAACLSQNY KSRINQIKGL HCFEEEELKA LPGISGVDPL KVLISTQGLI IDGLALAKLL
RQKYRIQVEL AAPEIILAIM SIFHEGDDWE RLYRALEELA RDYRARAPVS LVEGEIPPLP
CLILAPREAY MATKISLPLD ECRGAIAGEI IAAYPPGIPC LLPGELIDDT MLDYLRYLKK
SGLRLQGPQD PALNYVKIIE