| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_4062 |
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| Symbol | trmE |
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| ID | 4280953 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4841032 |
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| End bp | 4842393 |
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| Gene Length | 1362 bp |
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| Protein Length | 453 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638136887 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_752726 |
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| Protein GI | 114565212 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.112278 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGACAACAG ACACTATTGT GGCACAAGCC ACCGCCCCTG GAAGAGGTGG CGTAGGCATC
ATTCGTATTT CTGGTGATTT AGCCACTAAT GTAGCAACAG CGATTATTGG CCATGTGCCT
AAAACTCGTT ACGCAGAATA TTGTGACTTT AACAATGCTG ACGGTCAGGT GATTGATCAA
GGGATTGCGC TATTTTTTAA AGGACCAAAT TCATTTACCG GCGAAGATGT CCTAGAACTG
CAAGGTCATG GTGGTCAAAT CGTGCTCGAC ATGCTAATTA AGCGTGTAAT GGAAATAGAC
GGTATTCGCA TTGCTAGACC AGGTGAGTTC AGCGAACAAG CCTTTATGAA CGATAAACTC
GACTTAACTC AAGCAGAAGC GATTGCTGAC TTAATTGATG CTACCAGTGA ACAGGCAGCA
AAAAGTGCCT TGCAATCACT ACAGGGTGAA TTTTCAAAAG AAGTCCATGA GCTTGTCGAC
CAAGTCACCA ACCTGCGCTT ATATGTAGAA GCAGCGATTG ACTTCCCCGA TGAGGAAGTC
GACTTTCTAT CCGACGGTAA AATTGCCAAC GCGTTATATA AAATCATCAG TAAACTAGAC
ACTGTACAAG CTAGCGCCAA GCAAGGTTCA ATCATCCGCG AAGGAATGAA AGTTGTGATT
GCCGGCCGCC CTAATGCCGG TAAATCAAGC TTACTTAATG CATTAGCCGG TAAAGAATCA
GCCATTGTGA CTGAAATTGC TGGAACGACT CGCGATGTAC TTCGTGAACA TATCCACTTA
GACGGTATGC CACTGCACAT TATCGATACG GCTGGGTTAC GAGACACACT CGATACTGTT
GAACAAATAG GTATCGAACG CGCATGGGCA GAAATAGCCA GTGCCGATAG AGTCTTGTTT
ATGGTCGATG GCACCACAAC CGATGCTGTA AATCCTCACG AAATTTGGCC CGACTTTATC
GACCGTTTAC CAGCAAAACT AGGGGTAACC GTAGTACGAA ATAAAGCAGA TTTAACCGGT
GAAACCTTAG ATAAAACCGA AGAACAAGGC AGTTGTGTTT ACCGGATATC AGCTAAAACA
GGTTTAGGTA TTGATGAGTT AAAACAGCAT CTTAAATCAT TAATGGGTTA CCAAAGTAAC
TTAGAGGGTG GCTTTATTGC CCGTCGCCGT CATTTAGAAG CGCTCGAGCT TGCCGCAAAT
CACTTACAGT TGGGCAAAGA ACAGCTTGAA GTGTATTTAG CTGGAGAGTT ACTGGCAGAA
GAACTGCGCA TGACACAAAT GGCCTTATCT GAAATCACCG GTAAATTCAC CTCAGATGAT
CTATTGGGCA AGATTTTTGG CTCATTCTGT ATTGGTAAAT AG
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| Protein sequence | MTTDTIVAQA TAPGRGGVGI IRISGDLATN VATAIIGHVP KTRYAEYCDF NNADGQVIDQ
GIALFFKGPN SFTGEDVLEL QGHGGQIVLD MLIKRVMEID GIRIARPGEF SEQAFMNDKL
DLTQAEAIAD LIDATSEQAA KSALQSLQGE FSKEVHELVD QVTNLRLYVE AAIDFPDEEV
DFLSDGKIAN ALYKIISKLD TVQASAKQGS IIREGMKVVI AGRPNAGKSS LLNALAGKES
AIVTEIAGTT RDVLREHIHL DGMPLHIIDT AGLRDTLDTV EQIGIERAWA EIASADRVLF
MVDGTTTDAV NPHEIWPDFI DRLPAKLGVT VVRNKADLTG ETLDKTEEQG SCVYRISAKT
GLGIDELKQH LKSLMGYQSN LEGGFIARRR HLEALELAAN HLQLGKEQLE VYLAGELLAE
ELRMTQMALS EITGKFTSDD LLGKIFGSFC IGK
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