| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_4037 |
|---|
| Symbol | |
|---|
| ID | 4280928 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 4814835 |
|---|
| End bp | 4816028 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638136862 |
|---|
| Product | PUA domain-containing protein |
|---|
| Protein accession | YP_752701 |
|---|
| Protein GI | 114565187 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1092] Predicted SAM-dependent methyltransferases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.663766 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTATCA GAATTAAACT TAAACCTGGC CGCGAACGTT CGTTAGAGCG TCGCCACCCT
TGGATATTTT CCAATGGAAT TCACAACGTC AATGGCGGAA AACCGCAAGC TGGTGACACT
GTTGAAGTAG TGGCGCACGA CGGGCATTGG CTCGGACGCG GTGCCTGGTC GCCAGAATCT
CAAATCCAAG TGCGGATATG GACCTTCGAC AAAGAAGAAA CTATCGATGC CGATTTTTTC
GCCCGACGCA TTAAAAGAGC CCAAGCGGGT CGTGATGATT TGATCCGCGA ACAAGGTCTA
ACGGGCTATC GCTTAATTGC CGCTGAATCG GACGGTTTAC CCGGTATCAC CATAGACCGT
TATGCCAATG TTCTGGTATG TCAGTTATTG AGTACTGGTG CTGAAAAGTG GCGCGATACT
ATCGTTGAGC AACTGGTTCT TCAATATCCG GACTGCGCGG TCTATGAGCG TTCAGATGTT
GACTCAAGAA AGAAAGAAGG CTTAGTTCCT GTAGTAGGAT TACTGCACGG GGAGTTACCT
GCTATGCCCG TGATCATCGA AGAAAATGGT ATTAAGATTG CCGTCGATGT TGTTAAAGGT
CATAAAACAG GTTTCTATCT GGATCAACGT GACAACCGTG CCATGGCAGC CCGTTTTGTC
AAAGGTAAAT CAGTGCTTAA CTGCTTCTGT TACACCGGTA CTTTTGGCTT GTATGCTGCC
AAAGCTGGCG CTGCGAGTAT TGAAAACGTC GATGTATCAA CCTTAGCGCT GCAAACTGCT
CGCGATAATA TGGCCATTAA CAACCTTAAT GATGACCATG TAAATTATAA CGAAGCTGAC
GTATTCAAAT TACTACGCCA GTACCGAGAT GAAGGTAAAA CCTTTGATGT TATTGTCTTA
GACCCGCCTA AATTTGCCGA CAATAAGTCA CAACTCGATG GCGCATGTCG CGGTTATAAA
GACATCAATA TGATTGCGAT GCAATTACTT AATCCAGGCG GAATATTACT GACGTTCTCG
TGTTCAGGCT TAATGCAGTC AGACCTATTC CAAAAAGTGG TTGCCGATGC TGCACTTGAT
GCCAAGCGTG AAGTGCAATT TATTGAACGC ATGCACCAAG CAAGCGACCA CCCAATTAGT
AGCGCATTCC CAGAAGGTTA TTACCTCAAA GGACTCGTTG CTCGCGTTTG GTAA
|
|---|
| Protein sequence | MAIRIKLKPG RERSLERRHP WIFSNGIHNV NGGKPQAGDT VEVVAHDGHW LGRGAWSPES
QIQVRIWTFD KEETIDADFF ARRIKRAQAG RDDLIREQGL TGYRLIAAES DGLPGITIDR
YANVLVCQLL STGAEKWRDT IVEQLVLQYP DCAVYERSDV DSRKKEGLVP VVGLLHGELP
AMPVIIEENG IKIAVDVVKG HKTGFYLDQR DNRAMAARFV KGKSVLNCFC YTGTFGLYAA
KAGAASIENV DVSTLALQTA RDNMAINNLN DDHVNYNEAD VFKLLRQYRD EGKTFDVIVL
DPPKFADNKS QLDGACRGYK DINMIAMQLL NPGGILLTFS CSGLMQSDLF QKVVADAALD
AKREVQFIER MHQASDHPIS SAFPEGYYLK GLVARVW
|
|---|
| |