Gene Sfri_4002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_4002 
Symbol 
ID4280893 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp4769935 
End bp4770945 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content46% 
IMG OID638136823 
Productglyceraldehyde-3-phosphate dehydrogenase 
Protein accessionYP_752666 
Protein GI114565152 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGATAA AAATAGGCAT TAACGGTTTT GGCCGTATGG GACGTTTATC CATGCGTGCG 
GCGTATGATT GGGACGATGT TGAAATTGTA CATATTAACG ATCCTGCTGG CGATGCCGCC 
ACGCTGGCAC ATTTAATGAC CTTTGATTCA GTCCATGGCC GCTGGCACCA CGAGGCAACA 
CATGACGGTG ATGCTATTGT TATTAACGGC AAAGCCATTC CTTGCAGCCG TAATGTCGCT 
ACCCAAGACA CCGATTGGTC AAAATGCGAT GTGGTGATTG AAGCCTCAGG CAAGATAAAA 
ACCAAAGCCT TGCTACAAGC TTACTTAGAT CAAGGTGTAA AACGGGTTGT GGTAACCGCA 
CCAGTAAAAG AAGACGGCGT GCTTAATATT GTGATGGGTG TAAATGATGA TTTATACGAC 
AAAGCCATTC ACCCAATCGT GACCGCAGCT TCTTGTACCA CCAACTGCTT AGCGCCTGTA 
GTAAAAGTTA TCCATGAGAA CATTGGCATT AAGCATGGCT CAATGACCAC AATTCATGAC 
ATCACCAATA CCCAAACTAT TTTAGATGCA CCGCATCAAG ATTTACGTCG CGCCCGTGCG 
TGTGGCATTA GTTTGATACC AACTACTACT GGTTCTGCTA CCGCGATTAC TCATATATTC 
CCTGAGTTAA AAGGCAAGTT AAATGGTCAT GCGATACGGG TGCCGTTAGC CAATGCGTCA 
CTCACCGATT GTGTATTTGA AGTGGCTCGT GGAACGACTG CAGAAGAAGT AAACCAGTTA 
TTGAAGCAAG CTGCTGATAG TGAGCTTAAG GGCATTATGG GTTATGAAGA GCGTCCATTA 
GTGTCGGTAG ATTATAAAAC CGACCCGCGC TCAAGCATTA TCGATGCCTT GTCGACCATG 
GTGGTGAATG ACACCCAAGT TAAACTGTAT GTGTGGTACG ACAACGAGTG GGGATATGCC 
AATCGTACCG CAGAGCTCGC CCGCAAAGTG GGCTTAGCAG ATAAGGAATA A
 
Protein sequence
MTIKIGINGF GRMGRLSMRA AYDWDDVEIV HINDPAGDAA TLAHLMTFDS VHGRWHHEAT 
HDGDAIVING KAIPCSRNVA TQDTDWSKCD VVIEASGKIK TKALLQAYLD QGVKRVVVTA 
PVKEDGVLNI VMGVNDDLYD KAIHPIVTAA SCTTNCLAPV VKVIHENIGI KHGSMTTIHD 
ITNTQTILDA PHQDLRRARA CGISLIPTTT GSATAITHIF PELKGKLNGH AIRVPLANAS 
LTDCVFEVAR GTTAEEVNQL LKQAADSELK GIMGYEERPL VSVDYKTDPR SSIIDALSTM 
VVNDTQVKLY VWYDNEWGYA NRTAELARKV GLADKE