| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3985 |
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| Symbol | |
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| ID | 4280876 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 4748570 |
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| End bp | 4749802 |
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| Gene Length | 1233 bp |
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| Protein Length | 410 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638136806 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_752649 |
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| Protein GI | 114565135 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGACGT TAAAATCAAT TAAAATCACT TTGTTAGTAA GCCTAACGGC ATTGCTATTA
GTGGCGTGCG GAAAGCAACC AGCACAACAA GCGAATACAC CCGCAGCGCC TAAGGTGGAT
GTTGCCAACG TACTTTATGA ACGCATTACC GAGTGGGATC AATTTACTGG ACGCTTACAA
GCACCAGAAA AGGTTACTTT GGTACCTCGC GTGTCAGGTT ATATTGAATC GATTAACTTT
AAAGAAGGCG CGCTAGTGCA AAAAGACGAT GTGTTATTTA CCATCGACTC GAGTGTATTT
ACGGCTGAAT ATGAGCGTCT TAAAGCAGAA TTAACCAGTG CAATATCTGC TAACCAACTT
GCTGAAAATG ACTATGAACG GGCCAATAAG CTGTTCCATC AAAAAGCGGT TTCAGAAGAG
CTTATTGATA CTCGTCGCTC TAACATGCAC CAAACTGCTG CCGCAGTTGC ATCAGTTAAA
GCCGCGTTGA CCCGCGCCCA ACTTAACGTT GAATATACTC ATGTTACCGC CCCAATTACG
GGTCGAGTTT CATACGCAAA TGAAACGGCA GGTAATTATG TCACCGCCGG ACAAACGCAT
CTCACCAGCT TAGTGTCTAC ATCGCATATG TACGCTTACT TCGATATAGA CGAGCGAACC
TATTTAAAGT ATGCCGCGTT ATCGTTCGAG AACAAACGTC AAAGTCCACG GTTGGGCAAT
AATGCAGTGG TTATGGCACT AGCAAATGAA ACCAATTTTA ATCATCAGGG TGTGATCGAC
TTTGTCGATA ATACGGTTGA CCAGCAAACA GGTACTATCC GCGTTCGCGC TAATTTTGCC
AACCAAGACA ATCAATTATT ACCCGGCTTA TTTGCCCGCA TCAGCATTGC GGGTAGCGAG
TCATACGACA GTATTTTAAT TGACGACAAA GCCATTTTTA CCGACTTAAA TAACAAGTTT
GTTCTGGTGG TAAATGACAA AAACACCCTT GAGTATCGTA GCGTTAGCCT AGGTGAGAAG
CTTCACGGTT TACGTATTAT TACTGCCGGT TTATCCCCTA GCGATACCAT CGTGGTAAAC
AGTCTGCAGA AAGTACGCCC TAACGTTACT ATTGAGCCAA ACCTTACAGA TATGGCCGAT
AGCGACAAAT TAGAAGCATT ACATCAAGCA CAACGCCTCC TCGATAACCA GCCATTGACA
GCACGCGTTG CTGATGACGC AAGTCAGGGT TAA
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| Protein sequence | MKTLKSIKIT LLVSLTALLL VACGKQPAQQ ANTPAAPKVD VANVLYERIT EWDQFTGRLQ
APEKVTLVPR VSGYIESINF KEGALVQKDD VLFTIDSSVF TAEYERLKAE LTSAISANQL
AENDYERANK LFHQKAVSEE LIDTRRSNMH QTAAAVASVK AALTRAQLNV EYTHVTAPIT
GRVSYANETA GNYVTAGQTH LTSLVSTSHM YAYFDIDERT YLKYAALSFE NKRQSPRLGN
NAVVMALANE TNFNHQGVID FVDNTVDQQT GTIRVRANFA NQDNQLLPGL FARISIAGSE
SYDSILIDDK AIFTDLNNKF VLVVNDKNTL EYRSVSLGEK LHGLRIITAG LSPSDTIVVN
SLQKVRPNVT IEPNLTDMAD SDKLEALHQA QRLLDNQPLT ARVADDASQG
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